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Leveraging vibration of effects analysis for robust discovery in observational biomedical data science

Hypothesis generation in observational, biomedical data science often starts with computing an association or identifying the statistical relationship between a dependent and an independent variable. However, the outcome of this process depends fundamentally on modeling strategy, with differing stra...

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Autores principales: Tierney, Braden T., Anderson, Elizabeth, Tan, Yingxuan, Claypool, Kajal, Tangirala, Sivateja, Kostic, Aleksandar D., Manrai, Arjun K., Patel, Chirag J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510627/
https://www.ncbi.nlm.nih.gov/pubmed/34555021
http://dx.doi.org/10.1371/journal.pbio.3001398
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author Tierney, Braden T.
Anderson, Elizabeth
Tan, Yingxuan
Claypool, Kajal
Tangirala, Sivateja
Kostic, Aleksandar D.
Manrai, Arjun K.
Patel, Chirag J.
author_facet Tierney, Braden T.
Anderson, Elizabeth
Tan, Yingxuan
Claypool, Kajal
Tangirala, Sivateja
Kostic, Aleksandar D.
Manrai, Arjun K.
Patel, Chirag J.
author_sort Tierney, Braden T.
collection PubMed
description Hypothesis generation in observational, biomedical data science often starts with computing an association or identifying the statistical relationship between a dependent and an independent variable. However, the outcome of this process depends fundamentally on modeling strategy, with differing strategies generating what can be called “vibration of effects” (VoE). VoE is defined by variation in associations that often lead to contradictory results. Here, we present a computational tool capable of modeling VoE in biomedical data by fitting millions of different models and comparing their output. We execute a VoE analysis on a series of widely reported associations (e.g., carrot intake associated with eyesight) with an extended additional focus on lifestyle exposures (e.g., physical activity) and components of the Framingham Risk Score for cardiovascular health (e.g., blood pressure). We leveraged our tool for potential confounder identification, investigating what adjusting variables are responsible for conflicting models. We propose modeling VoE as a critical step in navigating discovery in observational data, discerning robust associations, and cataloging adjusting variables that impact model output.
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spelling pubmed-85106272021-10-13 Leveraging vibration of effects analysis for robust discovery in observational biomedical data science Tierney, Braden T. Anderson, Elizabeth Tan, Yingxuan Claypool, Kajal Tangirala, Sivateja Kostic, Aleksandar D. Manrai, Arjun K. Patel, Chirag J. PLoS Biol Meta-Research Article Hypothesis generation in observational, biomedical data science often starts with computing an association or identifying the statistical relationship between a dependent and an independent variable. However, the outcome of this process depends fundamentally on modeling strategy, with differing strategies generating what can be called “vibration of effects” (VoE). VoE is defined by variation in associations that often lead to contradictory results. Here, we present a computational tool capable of modeling VoE in biomedical data by fitting millions of different models and comparing their output. We execute a VoE analysis on a series of widely reported associations (e.g., carrot intake associated with eyesight) with an extended additional focus on lifestyle exposures (e.g., physical activity) and components of the Framingham Risk Score for cardiovascular health (e.g., blood pressure). We leveraged our tool for potential confounder identification, investigating what adjusting variables are responsible for conflicting models. We propose modeling VoE as a critical step in navigating discovery in observational data, discerning robust associations, and cataloging adjusting variables that impact model output. Public Library of Science 2021-09-23 /pmc/articles/PMC8510627/ /pubmed/34555021 http://dx.doi.org/10.1371/journal.pbio.3001398 Text en © 2021 Tierney et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Meta-Research Article
Tierney, Braden T.
Anderson, Elizabeth
Tan, Yingxuan
Claypool, Kajal
Tangirala, Sivateja
Kostic, Aleksandar D.
Manrai, Arjun K.
Patel, Chirag J.
Leveraging vibration of effects analysis for robust discovery in observational biomedical data science
title Leveraging vibration of effects analysis for robust discovery in observational biomedical data science
title_full Leveraging vibration of effects analysis for robust discovery in observational biomedical data science
title_fullStr Leveraging vibration of effects analysis for robust discovery in observational biomedical data science
title_full_unstemmed Leveraging vibration of effects analysis for robust discovery in observational biomedical data science
title_short Leveraging vibration of effects analysis for robust discovery in observational biomedical data science
title_sort leveraging vibration of effects analysis for robust discovery in observational biomedical data science
topic Meta-Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510627/
https://www.ncbi.nlm.nih.gov/pubmed/34555021
http://dx.doi.org/10.1371/journal.pbio.3001398
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