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Draft genome of Semisulcospira libertina, a species of freshwater snail

Semisulcospira libertina, a species of freshwater snail, is widespread in East Asia. It is important as a food source. Additionally, it is a vector of clonorchiasis, paragonimiasis, metagonimiasis, and other parasites. Although S. libertina has ecological, commercial, and clinical importance, its wh...

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Autores principales: Gim, Jeong-An, Baek, Kyung-Wan, Hah, Young-Sool, Choo, Ho Jin, Kim, Ji-Seok, Yoo, Jun-Il
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510874/
https://www.ncbi.nlm.nih.gov/pubmed/34638179
http://dx.doi.org/10.5808/gi.21039
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author Gim, Jeong-An
Baek, Kyung-Wan
Hah, Young-Sool
Choo, Ho Jin
Kim, Ji-Seok
Yoo, Jun-Il
author_facet Gim, Jeong-An
Baek, Kyung-Wan
Hah, Young-Sool
Choo, Ho Jin
Kim, Ji-Seok
Yoo, Jun-Il
author_sort Gim, Jeong-An
collection PubMed
description Semisulcospira libertina, a species of freshwater snail, is widespread in East Asia. It is important as a food source. Additionally, it is a vector of clonorchiasis, paragonimiasis, metagonimiasis, and other parasites. Although S. libertina has ecological, commercial, and clinical importance, its whole-genome has not been reported yet. Here, we revealed the genome of S. libertina through de novo assembly. We assembled the whole-genome of S. libertina and determined its transcriptome for the first time using Illumina NovaSeq 6000 platform. According to the k-mer analysis, the genome size of S. libertina was estimated to be 3.04 Gb. Using RepeatMasker, a total of 53.68% of repeats were identified in the genome assembly. Genome data of S. libertina reported in this study will be useful for identification and conservation of S. libertina in East Asia.
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spelling pubmed-85108742021-10-22 Draft genome of Semisulcospira libertina, a species of freshwater snail Gim, Jeong-An Baek, Kyung-Wan Hah, Young-Sool Choo, Ho Jin Kim, Ji-Seok Yoo, Jun-Il Genomics Inform Original Article Semisulcospira libertina, a species of freshwater snail, is widespread in East Asia. It is important as a food source. Additionally, it is a vector of clonorchiasis, paragonimiasis, metagonimiasis, and other parasites. Although S. libertina has ecological, commercial, and clinical importance, its whole-genome has not been reported yet. Here, we revealed the genome of S. libertina through de novo assembly. We assembled the whole-genome of S. libertina and determined its transcriptome for the first time using Illumina NovaSeq 6000 platform. According to the k-mer analysis, the genome size of S. libertina was estimated to be 3.04 Gb. Using RepeatMasker, a total of 53.68% of repeats were identified in the genome assembly. Genome data of S. libertina reported in this study will be useful for identification and conservation of S. libertina in East Asia. Korea Genome Organization 2021-09-30 /pmc/articles/PMC8510874/ /pubmed/34638179 http://dx.doi.org/10.5808/gi.21039 Text en (c) 2021, Korea Genome Organization https://creativecommons.org/licenses/by/4.0/(CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Gim, Jeong-An
Baek, Kyung-Wan
Hah, Young-Sool
Choo, Ho Jin
Kim, Ji-Seok
Yoo, Jun-Il
Draft genome of Semisulcospira libertina, a species of freshwater snail
title Draft genome of Semisulcospira libertina, a species of freshwater snail
title_full Draft genome of Semisulcospira libertina, a species of freshwater snail
title_fullStr Draft genome of Semisulcospira libertina, a species of freshwater snail
title_full_unstemmed Draft genome of Semisulcospira libertina, a species of freshwater snail
title_short Draft genome of Semisulcospira libertina, a species of freshwater snail
title_sort draft genome of semisulcospira libertina, a species of freshwater snail
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8510874/
https://www.ncbi.nlm.nih.gov/pubmed/34638179
http://dx.doi.org/10.5808/gi.21039
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