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Machine learning enabling prediction of the bond dissociation enthalpy of hypervalent iodine from SMILES

Machine learning to create models on the basis of big data enables predictions from new input data. Many tasks formerly performed by humans can now be achieved by machine learning algorithms in various fields, including scientific areas. Hypervalent iodine compounds (HVIs) have long been applied as...

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Autores principales: Nakajima, Masaya, Nemoto, Tetsuhiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8511102/
https://www.ncbi.nlm.nih.gov/pubmed/34642360
http://dx.doi.org/10.1038/s41598-021-99369-8
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author Nakajima, Masaya
Nemoto, Tetsuhiro
author_facet Nakajima, Masaya
Nemoto, Tetsuhiro
author_sort Nakajima, Masaya
collection PubMed
description Machine learning to create models on the basis of big data enables predictions from new input data. Many tasks formerly performed by humans can now be achieved by machine learning algorithms in various fields, including scientific areas. Hypervalent iodine compounds (HVIs) have long been applied as useful reactive molecules. The bond dissociation enthalpy (BDE) value is an important indicator of reactivity and stability. Experimentally measuring the BDE value of HVIs is difficult, however, and the value has been estimated by quantum calculations, especially density functional theory (DFT) calculations. Although DFT calculations can access the BDE value with high accuracy, the process is highly time-consuming. Thus, we aimed to reduce the time for predicting the BDE by applying machine learning. We calculated the BDE of more than 1000 HVIs using DFT calculations, and performed machine learning. Converting SMILES strings to Avalon fingerprints and learning using a traditional Elastic Net made it possible to predict the BDE value with high accuracy. Furthermore, an applicability domain search revealed that the learning model could accurately predict the BDE even for uncovered inputs that were not completely included in the training data.
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spelling pubmed-85111022021-10-14 Machine learning enabling prediction of the bond dissociation enthalpy of hypervalent iodine from SMILES Nakajima, Masaya Nemoto, Tetsuhiro Sci Rep Article Machine learning to create models on the basis of big data enables predictions from new input data. Many tasks formerly performed by humans can now be achieved by machine learning algorithms in various fields, including scientific areas. Hypervalent iodine compounds (HVIs) have long been applied as useful reactive molecules. The bond dissociation enthalpy (BDE) value is an important indicator of reactivity and stability. Experimentally measuring the BDE value of HVIs is difficult, however, and the value has been estimated by quantum calculations, especially density functional theory (DFT) calculations. Although DFT calculations can access the BDE value with high accuracy, the process is highly time-consuming. Thus, we aimed to reduce the time for predicting the BDE by applying machine learning. We calculated the BDE of more than 1000 HVIs using DFT calculations, and performed machine learning. Converting SMILES strings to Avalon fingerprints and learning using a traditional Elastic Net made it possible to predict the BDE value with high accuracy. Furthermore, an applicability domain search revealed that the learning model could accurately predict the BDE even for uncovered inputs that were not completely included in the training data. Nature Publishing Group UK 2021-10-12 /pmc/articles/PMC8511102/ /pubmed/34642360 http://dx.doi.org/10.1038/s41598-021-99369-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Nakajima, Masaya
Nemoto, Tetsuhiro
Machine learning enabling prediction of the bond dissociation enthalpy of hypervalent iodine from SMILES
title Machine learning enabling prediction of the bond dissociation enthalpy of hypervalent iodine from SMILES
title_full Machine learning enabling prediction of the bond dissociation enthalpy of hypervalent iodine from SMILES
title_fullStr Machine learning enabling prediction of the bond dissociation enthalpy of hypervalent iodine from SMILES
title_full_unstemmed Machine learning enabling prediction of the bond dissociation enthalpy of hypervalent iodine from SMILES
title_short Machine learning enabling prediction of the bond dissociation enthalpy of hypervalent iodine from SMILES
title_sort machine learning enabling prediction of the bond dissociation enthalpy of hypervalent iodine from smiles
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8511102/
https://www.ncbi.nlm.nih.gov/pubmed/34642360
http://dx.doi.org/10.1038/s41598-021-99369-8
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