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Photochemistry of Thymine in Protic Polar Nanomeric Droplets Using Electrostatic Embeding TD-DFT/MM
Thymine photochemistry is important for understanding DNA photodamage. In the gas phase, thymine undergoes a fast non-radiative decay from S [Formula: see text] to S [Formula: see text] . In the S [Formula: see text] state, it gets trapped for several picoseconds until returning to the ground-state...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8513085/ https://www.ncbi.nlm.nih.gov/pubmed/34641565 http://dx.doi.org/10.3390/molecules26196021 |
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author | Huix-Rotllant, Miquel |
author_facet | Huix-Rotllant, Miquel |
author_sort | Huix-Rotllant, Miquel |
collection | PubMed |
description | Thymine photochemistry is important for understanding DNA photodamage. In the gas phase, thymine undergoes a fast non-radiative decay from S [Formula: see text] to S [Formula: see text] . In the S [Formula: see text] state, it gets trapped for several picoseconds until returning to the ground-state S [Formula: see text] . Here, we explore the electrostatic effects of nanomeric droplets of methanol and water on the excited states of thymine. For this purpose, we develop and implement an electrostatic embedding TD-DFT/MM method based on a QM/MM coupling defined through electrostatic potential fitting charges. We show that both in methanol and water, the mechanism is similar to the gas phase. The solvent molecules participate in defining the branching plane of S [Formula: see text] /S [Formula: see text] intersection and have a negligible effect on the S [Formula: see text] /S [Formula: see text] intersection. Despite the wrong topology of the ground/excited state intersections, electrostatic embedding TD-DFT/MM allows for a fast exploration of the potential energy surfaces and a qualitative picture of the photophysics of thymine in solvent droplets. |
format | Online Article Text |
id | pubmed-8513085 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-85130852021-10-14 Photochemistry of Thymine in Protic Polar Nanomeric Droplets Using Electrostatic Embeding TD-DFT/MM Huix-Rotllant, Miquel Molecules Article Thymine photochemistry is important for understanding DNA photodamage. In the gas phase, thymine undergoes a fast non-radiative decay from S [Formula: see text] to S [Formula: see text] . In the S [Formula: see text] state, it gets trapped for several picoseconds until returning to the ground-state S [Formula: see text] . Here, we explore the electrostatic effects of nanomeric droplets of methanol and water on the excited states of thymine. For this purpose, we develop and implement an electrostatic embedding TD-DFT/MM method based on a QM/MM coupling defined through electrostatic potential fitting charges. We show that both in methanol and water, the mechanism is similar to the gas phase. The solvent molecules participate in defining the branching plane of S [Formula: see text] /S [Formula: see text] intersection and have a negligible effect on the S [Formula: see text] /S [Formula: see text] intersection. Despite the wrong topology of the ground/excited state intersections, electrostatic embedding TD-DFT/MM allows for a fast exploration of the potential energy surfaces and a qualitative picture of the photophysics of thymine in solvent droplets. MDPI 2021-10-04 /pmc/articles/PMC8513085/ /pubmed/34641565 http://dx.doi.org/10.3390/molecules26196021 Text en © 2021 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Huix-Rotllant, Miquel Photochemistry of Thymine in Protic Polar Nanomeric Droplets Using Electrostatic Embeding TD-DFT/MM |
title | Photochemistry of Thymine in Protic Polar Nanomeric Droplets Using Electrostatic Embeding TD-DFT/MM |
title_full | Photochemistry of Thymine in Protic Polar Nanomeric Droplets Using Electrostatic Embeding TD-DFT/MM |
title_fullStr | Photochemistry of Thymine in Protic Polar Nanomeric Droplets Using Electrostatic Embeding TD-DFT/MM |
title_full_unstemmed | Photochemistry of Thymine in Protic Polar Nanomeric Droplets Using Electrostatic Embeding TD-DFT/MM |
title_short | Photochemistry of Thymine in Protic Polar Nanomeric Droplets Using Electrostatic Embeding TD-DFT/MM |
title_sort | photochemistry of thymine in protic polar nanomeric droplets using electrostatic embeding td-dft/mm |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8513085/ https://www.ncbi.nlm.nih.gov/pubmed/34641565 http://dx.doi.org/10.3390/molecules26196021 |
work_keys_str_mv | AT huixrotllantmiquel photochemistryofthymineinproticpolarnanomericdropletsusingelectrostaticembedingtddftmm |