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An empirical model for solvation based on surface site interaction points
Surface site interaction points (SSIP) provide a quantitative description of the non-covalent interactions a molecule makes with the environment based on specific intermolecular contacts, such as H-bonds. Summation of the free energy of interaction of each SSIP across the surface of a molecule allow...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8513935/ https://www.ncbi.nlm.nih.gov/pubmed/34745551 http://dx.doi.org/10.1039/d1sc03392a |
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author | Reynolds, Derek P. Storer, Maria Chiara Hunter, Christopher A. |
author_facet | Reynolds, Derek P. Storer, Maria Chiara Hunter, Christopher A. |
author_sort | Reynolds, Derek P. |
collection | PubMed |
description | Surface site interaction points (SSIP) provide a quantitative description of the non-covalent interactions a molecule makes with the environment based on specific intermolecular contacts, such as H-bonds. Summation of the free energy of interaction of each SSIP across the surface of a molecule allows calculation of solvation energies and partition coefficients. A rule-based approach to the assignment of SSIPs based on chemical structure has been developed, and a combination of experimental data on the formation of 1 : 1 H-bonded complexes in non-polar solvents and partition of solutes between different solvents was used to parameterise the method. The resulting model is simple to implement using just a spreadsheet and accurately describes the transfer of a wide range of different solutes from water to a wide range of different organic solvents (overall rmsd is 1.4 kJ mol(−1) for 1713 data points). The hydrophobic effect as well as the properties of perfluorocarbon solvents are described well by the model, and new descriptors have been determined for range of organic solvents that were not accessible by direct investigation of H-bond formation in non-polar solvents. |
format | Online Article Text |
id | pubmed-8513935 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-85139352021-11-04 An empirical model for solvation based on surface site interaction points Reynolds, Derek P. Storer, Maria Chiara Hunter, Christopher A. Chem Sci Chemistry Surface site interaction points (SSIP) provide a quantitative description of the non-covalent interactions a molecule makes with the environment based on specific intermolecular contacts, such as H-bonds. Summation of the free energy of interaction of each SSIP across the surface of a molecule allows calculation of solvation energies and partition coefficients. A rule-based approach to the assignment of SSIPs based on chemical structure has been developed, and a combination of experimental data on the formation of 1 : 1 H-bonded complexes in non-polar solvents and partition of solutes between different solvents was used to parameterise the method. The resulting model is simple to implement using just a spreadsheet and accurately describes the transfer of a wide range of different solutes from water to a wide range of different organic solvents (overall rmsd is 1.4 kJ mol(−1) for 1713 data points). The hydrophobic effect as well as the properties of perfluorocarbon solvents are described well by the model, and new descriptors have been determined for range of organic solvents that were not accessible by direct investigation of H-bond formation in non-polar solvents. The Royal Society of Chemistry 2021-09-16 /pmc/articles/PMC8513935/ /pubmed/34745551 http://dx.doi.org/10.1039/d1sc03392a Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Reynolds, Derek P. Storer, Maria Chiara Hunter, Christopher A. An empirical model for solvation based on surface site interaction points |
title | An empirical model for solvation based on surface site interaction points |
title_full | An empirical model for solvation based on surface site interaction points |
title_fullStr | An empirical model for solvation based on surface site interaction points |
title_full_unstemmed | An empirical model for solvation based on surface site interaction points |
title_short | An empirical model for solvation based on surface site interaction points |
title_sort | empirical model for solvation based on surface site interaction points |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8513935/ https://www.ncbi.nlm.nih.gov/pubmed/34745551 http://dx.doi.org/10.1039/d1sc03392a |
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