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Convergent cross sorting for estimating dynamic coupling
Natural systems exhibit diverse behavior generated by complex interactions between their constituent parts. To characterize these interactions, we introduce Convergent Cross Sorting (CCS), a novel algorithm based on convergent cross mapping (CCM) for estimating dynamic coupling from time series data...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8514556/ https://www.ncbi.nlm.nih.gov/pubmed/34645847 http://dx.doi.org/10.1038/s41598-021-98864-2 |
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author | Breston, Leo Leonardis, Eric J. Quinn, Laleh K. Tolston, Michael Wiles, Janet Chiba, Andrea A. |
author_facet | Breston, Leo Leonardis, Eric J. Quinn, Laleh K. Tolston, Michael Wiles, Janet Chiba, Andrea A. |
author_sort | Breston, Leo |
collection | PubMed |
description | Natural systems exhibit diverse behavior generated by complex interactions between their constituent parts. To characterize these interactions, we introduce Convergent Cross Sorting (CCS), a novel algorithm based on convergent cross mapping (CCM) for estimating dynamic coupling from time series data. CCS extends CCM by using the relative ranking of distances within state-space reconstructions to improve the prior methods’ performance at identifying the existence, relative strength, and directionality of coupling across a wide range of signal and noise characteristics. In particular, relative to CCM, CCS has a large performance advantage when analyzing very short time series data and data from continuous dynamical systems with synchronous behavior. This advantage allows CCS to better uncover the temporal and directional relationships within systems that undergo frequent and short-lived switches in dynamics, such as neural systems. In this paper, we validate CCS on simulated data and demonstrate its applicability to electrophysiological recordings from interacting brain regions. |
format | Online Article Text |
id | pubmed-8514556 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-85145562021-10-14 Convergent cross sorting for estimating dynamic coupling Breston, Leo Leonardis, Eric J. Quinn, Laleh K. Tolston, Michael Wiles, Janet Chiba, Andrea A. Sci Rep Article Natural systems exhibit diverse behavior generated by complex interactions between their constituent parts. To characterize these interactions, we introduce Convergent Cross Sorting (CCS), a novel algorithm based on convergent cross mapping (CCM) for estimating dynamic coupling from time series data. CCS extends CCM by using the relative ranking of distances within state-space reconstructions to improve the prior methods’ performance at identifying the existence, relative strength, and directionality of coupling across a wide range of signal and noise characteristics. In particular, relative to CCM, CCS has a large performance advantage when analyzing very short time series data and data from continuous dynamical systems with synchronous behavior. This advantage allows CCS to better uncover the temporal and directional relationships within systems that undergo frequent and short-lived switches in dynamics, such as neural systems. In this paper, we validate CCS on simulated data and demonstrate its applicability to electrophysiological recordings from interacting brain regions. Nature Publishing Group UK 2021-10-13 /pmc/articles/PMC8514556/ /pubmed/34645847 http://dx.doi.org/10.1038/s41598-021-98864-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Breston, Leo Leonardis, Eric J. Quinn, Laleh K. Tolston, Michael Wiles, Janet Chiba, Andrea A. Convergent cross sorting for estimating dynamic coupling |
title | Convergent cross sorting for estimating dynamic coupling |
title_full | Convergent cross sorting for estimating dynamic coupling |
title_fullStr | Convergent cross sorting for estimating dynamic coupling |
title_full_unstemmed | Convergent cross sorting for estimating dynamic coupling |
title_short | Convergent cross sorting for estimating dynamic coupling |
title_sort | convergent cross sorting for estimating dynamic coupling |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8514556/ https://www.ncbi.nlm.nih.gov/pubmed/34645847 http://dx.doi.org/10.1038/s41598-021-98864-2 |
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