Cargando…

Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories

Many complex systems operating far from the equilibrium exhibit stochastic dynamics that can be described by a Langevin equation. Inferring Langevin equations from data can reveal how transient dynamics of such systems give rise to their function. However, dynamics are often inaccessible directly an...

Descripción completa

Detalles Bibliográficos
Autores principales: Genkin, Mikhail, Hughes, Owen, Engel, Tatiana A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8514604/
https://www.ncbi.nlm.nih.gov/pubmed/34645828
http://dx.doi.org/10.1038/s41467-021-26202-1
_version_ 1784583427228434432
author Genkin, Mikhail
Hughes, Owen
Engel, Tatiana A.
author_facet Genkin, Mikhail
Hughes, Owen
Engel, Tatiana A.
author_sort Genkin, Mikhail
collection PubMed
description Many complex systems operating far from the equilibrium exhibit stochastic dynamics that can be described by a Langevin equation. Inferring Langevin equations from data can reveal how transient dynamics of such systems give rise to their function. However, dynamics are often inaccessible directly and can be only gleaned through a stochastic observation process, which makes the inference challenging. Here we present a non-parametric framework for inferring the Langevin equation, which explicitly models the stochastic observation process and non-stationary latent dynamics. The framework accounts for the non-equilibrium initial and final states of the observed system and for the possibility that the system’s dynamics define the duration of observations. Omitting any of these non-stationary components results in incorrect inference, in which erroneous features arise in the dynamics due to non-stationary data distribution. We illustrate the framework using models of neural dynamics underlying decision making in the brain.
format Online
Article
Text
id pubmed-8514604
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-85146042021-10-29 Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories Genkin, Mikhail Hughes, Owen Engel, Tatiana A. Nat Commun Article Many complex systems operating far from the equilibrium exhibit stochastic dynamics that can be described by a Langevin equation. Inferring Langevin equations from data can reveal how transient dynamics of such systems give rise to their function. However, dynamics are often inaccessible directly and can be only gleaned through a stochastic observation process, which makes the inference challenging. Here we present a non-parametric framework for inferring the Langevin equation, which explicitly models the stochastic observation process and non-stationary latent dynamics. The framework accounts for the non-equilibrium initial and final states of the observed system and for the possibility that the system’s dynamics define the duration of observations. Omitting any of these non-stationary components results in incorrect inference, in which erroneous features arise in the dynamics due to non-stationary data distribution. We illustrate the framework using models of neural dynamics underlying decision making in the brain. Nature Publishing Group UK 2021-10-13 /pmc/articles/PMC8514604/ /pubmed/34645828 http://dx.doi.org/10.1038/s41467-021-26202-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Genkin, Mikhail
Hughes, Owen
Engel, Tatiana A.
Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories
title Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories
title_full Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories
title_fullStr Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories
title_full_unstemmed Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories
title_short Learning non-stationary Langevin dynamics from stochastic observations of latent trajectories
title_sort learning non-stationary langevin dynamics from stochastic observations of latent trajectories
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8514604/
https://www.ncbi.nlm.nih.gov/pubmed/34645828
http://dx.doi.org/10.1038/s41467-021-26202-1
work_keys_str_mv AT genkinmikhail learningnonstationarylangevindynamicsfromstochasticobservationsoflatenttrajectories
AT hughesowen learningnonstationarylangevindynamicsfromstochasticobservationsoflatenttrajectories
AT engeltatianaa learningnonstationarylangevindynamicsfromstochasticobservationsoflatenttrajectories