Cargando…

The Multi-Omic Prognostic Model of Oxidative Stress-Related Genes in Acute Myeloid Leukemia

Background: Acute myeloid leukemia (AML) is one of the most common cancers in the world, and oxidative stress is closely related to leukemia. A lot of effort has been made to improve the prognosis of AML. However, the situation remains serious. Hence, we focused on the study of prognostic genes in A...

Descripción completa

Detalles Bibliográficos
Autores principales: Dong, Chao, Zhang, Naijin, Zhang, Lijun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8514868/
https://www.ncbi.nlm.nih.gov/pubmed/34659343
http://dx.doi.org/10.3389/fgene.2021.722064
_version_ 1784583489654358016
author Dong, Chao
Zhang, Naijin
Zhang, Lijun
author_facet Dong, Chao
Zhang, Naijin
Zhang, Lijun
author_sort Dong, Chao
collection PubMed
description Background: Acute myeloid leukemia (AML) is one of the most common cancers in the world, and oxidative stress is closely related to leukemia. A lot of effort has been made to improve the prognosis of AML. However, the situation remains serious. Hence, we focused on the study of prognostic genes in AML. Materials and Methods: Prognostic oxidative stress genes were screened out. The gene expression profile of AML patients was downloaded from the The Cancer Genome Atlas (TCGA) database. The oxidative stress-related model was constructed, by which the prognosis of AML patients was predicted using the two GEO GSE23143 datasets and the stability of the GSE71014 authentication model. Results: The prognostic oxidative stress genes were screened out in AML, and the prognostic genes were significantly enriched in a large number of pathways based on Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. There was a complex interaction between prognostic genes and transcription factors. After constructing the prediction model, the clinical predictive value of the model was discussed in a multi-omic study. We investigated the sensitivity of risk score to common chemotherapeutic agents, the influence of signaling pathways on the prognosis of AML patients, and the correlation of multiple genes with immune score and immune dysfunction. Conclusions: A highly effective prognostic risk model for AML patients was established and validated. The association of prognostic oxidative stress genes with drug sensitivity, signaling pathways, and immune infiltration was explored. The results suggested that oxidative stress genes promised to be potential prognostic biomarkers for AML, which may provide a new basis for disease management.
format Online
Article
Text
id pubmed-8514868
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-85148682021-10-15 The Multi-Omic Prognostic Model of Oxidative Stress-Related Genes in Acute Myeloid Leukemia Dong, Chao Zhang, Naijin Zhang, Lijun Front Genet Genetics Background: Acute myeloid leukemia (AML) is one of the most common cancers in the world, and oxidative stress is closely related to leukemia. A lot of effort has been made to improve the prognosis of AML. However, the situation remains serious. Hence, we focused on the study of prognostic genes in AML. Materials and Methods: Prognostic oxidative stress genes were screened out. The gene expression profile of AML patients was downloaded from the The Cancer Genome Atlas (TCGA) database. The oxidative stress-related model was constructed, by which the prognosis of AML patients was predicted using the two GEO GSE23143 datasets and the stability of the GSE71014 authentication model. Results: The prognostic oxidative stress genes were screened out in AML, and the prognostic genes were significantly enriched in a large number of pathways based on Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. There was a complex interaction between prognostic genes and transcription factors. After constructing the prediction model, the clinical predictive value of the model was discussed in a multi-omic study. We investigated the sensitivity of risk score to common chemotherapeutic agents, the influence of signaling pathways on the prognosis of AML patients, and the correlation of multiple genes with immune score and immune dysfunction. Conclusions: A highly effective prognostic risk model for AML patients was established and validated. The association of prognostic oxidative stress genes with drug sensitivity, signaling pathways, and immune infiltration was explored. The results suggested that oxidative stress genes promised to be potential prognostic biomarkers for AML, which may provide a new basis for disease management. Frontiers Media S.A. 2021-09-30 /pmc/articles/PMC8514868/ /pubmed/34659343 http://dx.doi.org/10.3389/fgene.2021.722064 Text en Copyright © 2021 Dong, Zhang and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Dong, Chao
Zhang, Naijin
Zhang, Lijun
The Multi-Omic Prognostic Model of Oxidative Stress-Related Genes in Acute Myeloid Leukemia
title The Multi-Omic Prognostic Model of Oxidative Stress-Related Genes in Acute Myeloid Leukemia
title_full The Multi-Omic Prognostic Model of Oxidative Stress-Related Genes in Acute Myeloid Leukemia
title_fullStr The Multi-Omic Prognostic Model of Oxidative Stress-Related Genes in Acute Myeloid Leukemia
title_full_unstemmed The Multi-Omic Prognostic Model of Oxidative Stress-Related Genes in Acute Myeloid Leukemia
title_short The Multi-Omic Prognostic Model of Oxidative Stress-Related Genes in Acute Myeloid Leukemia
title_sort multi-omic prognostic model of oxidative stress-related genes in acute myeloid leukemia
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8514868/
https://www.ncbi.nlm.nih.gov/pubmed/34659343
http://dx.doi.org/10.3389/fgene.2021.722064
work_keys_str_mv AT dongchao themultiomicprognosticmodelofoxidativestressrelatedgenesinacutemyeloidleukemia
AT zhangnaijin themultiomicprognosticmodelofoxidativestressrelatedgenesinacutemyeloidleukemia
AT zhanglijun themultiomicprognosticmodelofoxidativestressrelatedgenesinacutemyeloidleukemia
AT dongchao multiomicprognosticmodelofoxidativestressrelatedgenesinacutemyeloidleukemia
AT zhangnaijin multiomicprognosticmodelofoxidativestressrelatedgenesinacutemyeloidleukemia
AT zhanglijun multiomicprognosticmodelofoxidativestressrelatedgenesinacutemyeloidleukemia