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Characterization of protein–ligand interactions by SABRE
Nuclear spin hyperpolarization through signal amplification by reversible exchange (SABRE), the non-hydrogenative version of para-hydrogen induced polarization, is demonstrated to enhance sensitivity for the detection of biomacromolecular interactions. A target ligand for the enzyme trypsin includes...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8515190/ https://www.ncbi.nlm.nih.gov/pubmed/34745525 http://dx.doi.org/10.1039/d1sc03404a |
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author | Mandal, Ratnamala Pham, Pierce Hilty, Christian |
author_facet | Mandal, Ratnamala Pham, Pierce Hilty, Christian |
author_sort | Mandal, Ratnamala |
collection | PubMed |
description | Nuclear spin hyperpolarization through signal amplification by reversible exchange (SABRE), the non-hydrogenative version of para-hydrogen induced polarization, is demonstrated to enhance sensitivity for the detection of biomacromolecular interactions. A target ligand for the enzyme trypsin includes the binding motif for the protein, and at a distant location a heterocyclic nitrogen atom for interacting with a SABRE polarization transfer catalyst. This molecule, 4-amidinopyridine, is hyperpolarized with 50% para-hydrogen to yield enhancement values ranging from −87 and −34 in the ortho and meta positions of the heterocyclic nitrogen, to −230 and −110, for different solution conditions. Ligand binding is identified by flow-NMR, in a two-step process that separately optimizes the polarization transfer in methanol while detecting the interaction in a predominantly aqueous medium. A single scan Carr–Purcell–Meiboom–Gill (CPMG) experiment identifies binding by the change in R(2) relaxation rate. The SABRE hyperpolarization technique provides a cost effective means to enhance NMR of biological systems, for the identification of protein–ligand interactions and other applications. |
format | Online Article Text |
id | pubmed-8515190 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-85151902021-11-04 Characterization of protein–ligand interactions by SABRE Mandal, Ratnamala Pham, Pierce Hilty, Christian Chem Sci Chemistry Nuclear spin hyperpolarization through signal amplification by reversible exchange (SABRE), the non-hydrogenative version of para-hydrogen induced polarization, is demonstrated to enhance sensitivity for the detection of biomacromolecular interactions. A target ligand for the enzyme trypsin includes the binding motif for the protein, and at a distant location a heterocyclic nitrogen atom for interacting with a SABRE polarization transfer catalyst. This molecule, 4-amidinopyridine, is hyperpolarized with 50% para-hydrogen to yield enhancement values ranging from −87 and −34 in the ortho and meta positions of the heterocyclic nitrogen, to −230 and −110, for different solution conditions. Ligand binding is identified by flow-NMR, in a two-step process that separately optimizes the polarization transfer in methanol while detecting the interaction in a predominantly aqueous medium. A single scan Carr–Purcell–Meiboom–Gill (CPMG) experiment identifies binding by the change in R(2) relaxation rate. The SABRE hyperpolarization technique provides a cost effective means to enhance NMR of biological systems, for the identification of protein–ligand interactions and other applications. The Royal Society of Chemistry 2021-08-31 /pmc/articles/PMC8515190/ /pubmed/34745525 http://dx.doi.org/10.1039/d1sc03404a Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Mandal, Ratnamala Pham, Pierce Hilty, Christian Characterization of protein–ligand interactions by SABRE |
title | Characterization of protein–ligand interactions by SABRE |
title_full | Characterization of protein–ligand interactions by SABRE |
title_fullStr | Characterization of protein–ligand interactions by SABRE |
title_full_unstemmed | Characterization of protein–ligand interactions by SABRE |
title_short | Characterization of protein–ligand interactions by SABRE |
title_sort | characterization of protein–ligand interactions by sabre |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8515190/ https://www.ncbi.nlm.nih.gov/pubmed/34745525 http://dx.doi.org/10.1039/d1sc03404a |
work_keys_str_mv | AT mandalratnamala characterizationofproteinligandinteractionsbysabre AT phampierce characterizationofproteinligandinteractionsbysabre AT hiltychristian characterizationofproteinligandinteractionsbysabre |