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A Joint Venture of Ab Initio Molecular Dynamics, Coupled Cluster Electronic Structure Methods, and Liquid-State Theory to Compute Accurate Isotropic Hyperfine Constants of Nitroxide Probes in Water
[Image: see text] The isotropic hyperfine coupling constant (HFCC, A(iso)) of a pH-sensitive spin probe in a solution, HMI (2,2,3,4,5,5-hexamethylimidazolidin-1-oxyl, C(9)H(19)N(2)O) in water, is computed using an ensemble of state-of-the-art computational techniques and is gauged against X-band con...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8515807/ https://www.ncbi.nlm.nih.gov/pubmed/34516119 http://dx.doi.org/10.1021/acs.jctc.1c00582 |
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author | Sharma, Bikramjit Tran, Van Anh Pongratz, Tim Galazzo, Laura Zhurko, Irina Bordignon, Enrica Kast, Stefan M. Neese, Frank Marx, Dominik |
author_facet | Sharma, Bikramjit Tran, Van Anh Pongratz, Tim Galazzo, Laura Zhurko, Irina Bordignon, Enrica Kast, Stefan M. Neese, Frank Marx, Dominik |
author_sort | Sharma, Bikramjit |
collection | PubMed |
description | [Image: see text] The isotropic hyperfine coupling constant (HFCC, A(iso)) of a pH-sensitive spin probe in a solution, HMI (2,2,3,4,5,5-hexamethylimidazolidin-1-oxyl, C(9)H(19)N(2)O) in water, is computed using an ensemble of state-of-the-art computational techniques and is gauged against X-band continuous wave electron paramagnetic resonance (EPR) measurement spectra at room temperature. Fundamentally, the investigation aims to delineate the cutting edge of current first-principles-based calculations of EPR parameters in aqueous solutions based on using rigorous statistical mechanics combined with correlated electronic structure techniques. In particular, the impact of solvation is described by exploiting fully atomistic, RISM integral equation, and implicit solvation approaches as offered by ab initio molecular dynamics (AIMD) of the periodic bulk solution (using the spin-polarized revPBE0-D3 hybrid functional), embedded cluster reference interaction site model integral equation theory (EC-RISM), and polarizable continuum embedding (using CPCM) of microsolvated complexes, respectively. HFCCs are obtained from efficient coupled cluster calculations (using open-shell DLPNO-CCSD theory) as well as from hybrid density functional theory (using revPBE0-D3). Re-solvation of “vertically desolvated” spin probe configuration snapshots by EC-RISM embedding is shown to provide significantly improved results compared to CPCM since only the former captures the inherent structural heterogeneity of the solvent close to the spin probe. The average values of the A(iso) parameter obtained based on configurational statistics using explicit water within AIMD and from EC-RISM solvation are found to be satisfactorily close. Using either such explicit or RISM solvation in conjunction with DLPNO-CCSD calculations of the HFCCs provides an average A(iso) parameter for HMI in aqueous solution at 300 K and 1 bar that is in good agreement with the experimentally determined one. The developed computational strategy is general in the sense that it can be readily applied to other spin probes of similar molecular complexity, to aqueous solutions beyond ambient conditions, as well as to other solvents in the longer run. |
format | Online Article Text |
id | pubmed-8515807 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-85158072021-10-15 A Joint Venture of Ab Initio Molecular Dynamics, Coupled Cluster Electronic Structure Methods, and Liquid-State Theory to Compute Accurate Isotropic Hyperfine Constants of Nitroxide Probes in Water Sharma, Bikramjit Tran, Van Anh Pongratz, Tim Galazzo, Laura Zhurko, Irina Bordignon, Enrica Kast, Stefan M. Neese, Frank Marx, Dominik J Chem Theory Comput [Image: see text] The isotropic hyperfine coupling constant (HFCC, A(iso)) of a pH-sensitive spin probe in a solution, HMI (2,2,3,4,5,5-hexamethylimidazolidin-1-oxyl, C(9)H(19)N(2)O) in water, is computed using an ensemble of state-of-the-art computational techniques and is gauged against X-band continuous wave electron paramagnetic resonance (EPR) measurement spectra at room temperature. Fundamentally, the investigation aims to delineate the cutting edge of current first-principles-based calculations of EPR parameters in aqueous solutions based on using rigorous statistical mechanics combined with correlated electronic structure techniques. In particular, the impact of solvation is described by exploiting fully atomistic, RISM integral equation, and implicit solvation approaches as offered by ab initio molecular dynamics (AIMD) of the periodic bulk solution (using the spin-polarized revPBE0-D3 hybrid functional), embedded cluster reference interaction site model integral equation theory (EC-RISM), and polarizable continuum embedding (using CPCM) of microsolvated complexes, respectively. HFCCs are obtained from efficient coupled cluster calculations (using open-shell DLPNO-CCSD theory) as well as from hybrid density functional theory (using revPBE0-D3). Re-solvation of “vertically desolvated” spin probe configuration snapshots by EC-RISM embedding is shown to provide significantly improved results compared to CPCM since only the former captures the inherent structural heterogeneity of the solvent close to the spin probe. The average values of the A(iso) parameter obtained based on configurational statistics using explicit water within AIMD and from EC-RISM solvation are found to be satisfactorily close. Using either such explicit or RISM solvation in conjunction with DLPNO-CCSD calculations of the HFCCs provides an average A(iso) parameter for HMI in aqueous solution at 300 K and 1 bar that is in good agreement with the experimentally determined one. The developed computational strategy is general in the sense that it can be readily applied to other spin probes of similar molecular complexity, to aqueous solutions beyond ambient conditions, as well as to other solvents in the longer run. American Chemical Society 2021-09-13 2021-10-12 /pmc/articles/PMC8515807/ /pubmed/34516119 http://dx.doi.org/10.1021/acs.jctc.1c00582 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Sharma, Bikramjit Tran, Van Anh Pongratz, Tim Galazzo, Laura Zhurko, Irina Bordignon, Enrica Kast, Stefan M. Neese, Frank Marx, Dominik A Joint Venture of Ab Initio Molecular Dynamics, Coupled Cluster Electronic Structure Methods, and Liquid-State Theory to Compute Accurate Isotropic Hyperfine Constants of Nitroxide Probes in Water |
title | A Joint Venture of Ab Initio Molecular Dynamics, Coupled
Cluster Electronic Structure Methods, and Liquid-State Theory to Compute
Accurate Isotropic Hyperfine Constants of Nitroxide Probes in Water |
title_full | A Joint Venture of Ab Initio Molecular Dynamics, Coupled
Cluster Electronic Structure Methods, and Liquid-State Theory to Compute
Accurate Isotropic Hyperfine Constants of Nitroxide Probes in Water |
title_fullStr | A Joint Venture of Ab Initio Molecular Dynamics, Coupled
Cluster Electronic Structure Methods, and Liquid-State Theory to Compute
Accurate Isotropic Hyperfine Constants of Nitroxide Probes in Water |
title_full_unstemmed | A Joint Venture of Ab Initio Molecular Dynamics, Coupled
Cluster Electronic Structure Methods, and Liquid-State Theory to Compute
Accurate Isotropic Hyperfine Constants of Nitroxide Probes in Water |
title_short | A Joint Venture of Ab Initio Molecular Dynamics, Coupled
Cluster Electronic Structure Methods, and Liquid-State Theory to Compute
Accurate Isotropic Hyperfine Constants of Nitroxide Probes in Water |
title_sort | joint venture of ab initio molecular dynamics, coupled
cluster electronic structure methods, and liquid-state theory to compute
accurate isotropic hyperfine constants of nitroxide probes in water |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8515807/ https://www.ncbi.nlm.nih.gov/pubmed/34516119 http://dx.doi.org/10.1021/acs.jctc.1c00582 |
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