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COFE-Net: An ensemble strategy for Computer-Aided Detection for COVID-19

Biomedical images contain a large volume of sensor measurements, which can reveal the descriptors of the disease under investigation. Computer-based analysis of such measurements helps detect the disease, and thereby swiftly aid medical professionals to choose adequate therapy. In this paper, we pro...

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Autores principales: Banerjee, Avinandan, Bhattacharya, Rajdeep, Bhateja, Vikrant, Singh, Pawan Kumar, Lay-Ekuakille, Aime’, Sarkar, Ram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8516129/
https://www.ncbi.nlm.nih.gov/pubmed/34663998
http://dx.doi.org/10.1016/j.measurement.2021.110289
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author Banerjee, Avinandan
Bhattacharya, Rajdeep
Bhateja, Vikrant
Singh, Pawan Kumar
Lay-Ekuakille, Aime’
Sarkar, Ram
author_facet Banerjee, Avinandan
Bhattacharya, Rajdeep
Bhateja, Vikrant
Singh, Pawan Kumar
Lay-Ekuakille, Aime’
Sarkar, Ram
author_sort Banerjee, Avinandan
collection PubMed
description Biomedical images contain a large volume of sensor measurements, which can reveal the descriptors of the disease under investigation. Computer-based analysis of such measurements helps detect the disease, and thereby swiftly aid medical professionals to choose adequate therapy. In this paper, we propose a robust deep learning ensemble framework known as COVID Fuzzy Ensemble Network, or COFE-Net. This strategy is proposed for the task of COVID-19 screening from chest X-rays (CXR) and CT Scans, as a part of Computer-Aided Detection (CADe) for medical practitioners. We leverage the strategy of Transfer Learning for Convolutional Neural Networks (CNNs) widely adopted in recent literature, and further propose an efficient ensemble network for their combination. The principles of fuzzy logic have been leveraged to combine the measured decision scores generated by three state-of-the-art CNNs – Inception V3, Inception ResNet V2 and DenseNet 201 – through the Choquet fuzzy integral. Experimental results support the efficacy of our approach over empirical ensembling, as the fuzzy ensembling strategy for biomedical measurement consists of dynamic refactoring of the classifier ensemble weights on the fly, based upon the confidence scores for coalitions of inputs. This is the chief advantage of our biomedical measurement strategy over others as other methods do not adjust to the multiple generated measurements dynamically unlike ours.Impressive results on multiple datasets demonstrate the effectiveness of the proposed method. The source code of our proposed method is made available at: https://github.com/theavicaster/covid-cade-ensemble.
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spelling pubmed-85161292021-10-14 COFE-Net: An ensemble strategy for Computer-Aided Detection for COVID-19 Banerjee, Avinandan Bhattacharya, Rajdeep Bhateja, Vikrant Singh, Pawan Kumar Lay-Ekuakille, Aime’ Sarkar, Ram Measurement (Lond) Article Biomedical images contain a large volume of sensor measurements, which can reveal the descriptors of the disease under investigation. Computer-based analysis of such measurements helps detect the disease, and thereby swiftly aid medical professionals to choose adequate therapy. In this paper, we propose a robust deep learning ensemble framework known as COVID Fuzzy Ensemble Network, or COFE-Net. This strategy is proposed for the task of COVID-19 screening from chest X-rays (CXR) and CT Scans, as a part of Computer-Aided Detection (CADe) for medical practitioners. We leverage the strategy of Transfer Learning for Convolutional Neural Networks (CNNs) widely adopted in recent literature, and further propose an efficient ensemble network for their combination. The principles of fuzzy logic have been leveraged to combine the measured decision scores generated by three state-of-the-art CNNs – Inception V3, Inception ResNet V2 and DenseNet 201 – through the Choquet fuzzy integral. Experimental results support the efficacy of our approach over empirical ensembling, as the fuzzy ensembling strategy for biomedical measurement consists of dynamic refactoring of the classifier ensemble weights on the fly, based upon the confidence scores for coalitions of inputs. This is the chief advantage of our biomedical measurement strategy over others as other methods do not adjust to the multiple generated measurements dynamically unlike ours.Impressive results on multiple datasets demonstrate the effectiveness of the proposed method. The source code of our proposed method is made available at: https://github.com/theavicaster/covid-cade-ensemble. Elsevier Ltd. 2022-01 2021-10-14 /pmc/articles/PMC8516129/ /pubmed/34663998 http://dx.doi.org/10.1016/j.measurement.2021.110289 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Banerjee, Avinandan
Bhattacharya, Rajdeep
Bhateja, Vikrant
Singh, Pawan Kumar
Lay-Ekuakille, Aime’
Sarkar, Ram
COFE-Net: An ensemble strategy for Computer-Aided Detection for COVID-19
title COFE-Net: An ensemble strategy for Computer-Aided Detection for COVID-19
title_full COFE-Net: An ensemble strategy for Computer-Aided Detection for COVID-19
title_fullStr COFE-Net: An ensemble strategy for Computer-Aided Detection for COVID-19
title_full_unstemmed COFE-Net: An ensemble strategy for Computer-Aided Detection for COVID-19
title_short COFE-Net: An ensemble strategy for Computer-Aided Detection for COVID-19
title_sort cofe-net: an ensemble strategy for computer-aided detection for covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8516129/
https://www.ncbi.nlm.nih.gov/pubmed/34663998
http://dx.doi.org/10.1016/j.measurement.2021.110289
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