Cargando…

The limitations, dangers, and benefits of simple methods for testing identifiability

In their Commentary paper, Villaverde and Massonis (On testing structural identifiability by a simple scaling method: relying on scaling symmetries can be misleading) have commented on our paper in which we proposed a simple scaling method to test structural identifiability. Our scaling invariance m...

Descripción completa

Detalles Bibliográficos
Autores principales: Castro, Mario, de Boer, Rob J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8516191/
https://www.ncbi.nlm.nih.gov/pubmed/34648494
http://dx.doi.org/10.1371/journal.pcbi.1009425
_version_ 1784583744730955776
author Castro, Mario
de Boer, Rob J.
author_facet Castro, Mario
de Boer, Rob J.
author_sort Castro, Mario
collection PubMed
description In their Commentary paper, Villaverde and Massonis (On testing structural identifiability by a simple scaling method: relying on scaling symmetries can be misleading) have commented on our paper in which we proposed a simple scaling method to test structural identifiability. Our scaling invariance method (SIM) tests for scaling symmetries only, and Villaverde and Massonis correctly show the SIM may fail to detect identifiability problems when a model has other types of symmetries. We agree with the limitations raised by these authors but, also, we emphasize that the method is still valuable for its applicability to a wide variety of models, its simplicity, and even as a tool to introduce the problem of identifiability to investigators with little training in mathematics.
format Online
Article
Text
id pubmed-8516191
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-85161912021-10-15 The limitations, dangers, and benefits of simple methods for testing identifiability Castro, Mario de Boer, Rob J. PLoS Comput Biol Formal Comment In their Commentary paper, Villaverde and Massonis (On testing structural identifiability by a simple scaling method: relying on scaling symmetries can be misleading) have commented on our paper in which we proposed a simple scaling method to test structural identifiability. Our scaling invariance method (SIM) tests for scaling symmetries only, and Villaverde and Massonis correctly show the SIM may fail to detect identifiability problems when a model has other types of symmetries. We agree with the limitations raised by these authors but, also, we emphasize that the method is still valuable for its applicability to a wide variety of models, its simplicity, and even as a tool to introduce the problem of identifiability to investigators with little training in mathematics. Public Library of Science 2021-10-14 /pmc/articles/PMC8516191/ /pubmed/34648494 http://dx.doi.org/10.1371/journal.pcbi.1009425 Text en © 2021 Castro, de Boer https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Formal Comment
Castro, Mario
de Boer, Rob J.
The limitations, dangers, and benefits of simple methods for testing identifiability
title The limitations, dangers, and benefits of simple methods for testing identifiability
title_full The limitations, dangers, and benefits of simple methods for testing identifiability
title_fullStr The limitations, dangers, and benefits of simple methods for testing identifiability
title_full_unstemmed The limitations, dangers, and benefits of simple methods for testing identifiability
title_short The limitations, dangers, and benefits of simple methods for testing identifiability
title_sort limitations, dangers, and benefits of simple methods for testing identifiability
topic Formal Comment
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8516191/
https://www.ncbi.nlm.nih.gov/pubmed/34648494
http://dx.doi.org/10.1371/journal.pcbi.1009425
work_keys_str_mv AT castromario thelimitationsdangersandbenefitsofsimplemethodsfortestingidentifiability
AT deboerrobj thelimitationsdangersandbenefitsofsimplemethodsfortestingidentifiability
AT castromario limitationsdangersandbenefitsofsimplemethodsfortestingidentifiability
AT deboerrobj limitationsdangersandbenefitsofsimplemethodsfortestingidentifiability