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Effects of Multiple Filters on Liver Tumor Segmentation From CT Images
Segmentation of liver tumors from Computerized Tomography (CT) images remains a challenge due to the natural variation in tumor shape and structure as well as the noise in CT images. A key assumption is that the performance of liver tumor segmentation depends on the characteristics of multiple featu...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8517527/ https://www.ncbi.nlm.nih.gov/pubmed/34660267 http://dx.doi.org/10.3389/fonc.2021.697178 |
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author | Vo, Vi Thi-Tuong Yang, Hyung-Jeong Lee, Guee-Sang Kang, Sae-Ryung Kim, Soo-Hyung |
author_facet | Vo, Vi Thi-Tuong Yang, Hyung-Jeong Lee, Guee-Sang Kang, Sae-Ryung Kim, Soo-Hyung |
author_sort | Vo, Vi Thi-Tuong |
collection | PubMed |
description | Segmentation of liver tumors from Computerized Tomography (CT) images remains a challenge due to the natural variation in tumor shape and structure as well as the noise in CT images. A key assumption is that the performance of liver tumor segmentation depends on the characteristics of multiple features extracted from multiple filters. In this paper, we design an enhanced approach based on a two-class (liver, tumor) convolutional neural network that discriminates tumor as well as liver from CT images. First, the contrast and intensity values in CT images are adjusted and high frequencies are removed using Hounsfield units (HU) filtering and standardization. Then, the liver tumor is segmented from entire images with multiple filter U-net (MFU-net). Finally, a quantitative analysis is carried out to evaluate the segmentation results using three different methods: boundary-distance-based metrics, size-based metrics, and overlap-based metrics. The proposed method is validated on CT images from the 3Dircadb and LiTS dataset. The results demonstrate that the multiple filters are useful for extracting local and global feature simultaneously, minimizing the boundary distance errors, and our approach demonstrates better performance in heterogeneous tumor regions of CT images. |
format | Online Article Text |
id | pubmed-8517527 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-85175272021-10-16 Effects of Multiple Filters on Liver Tumor Segmentation From CT Images Vo, Vi Thi-Tuong Yang, Hyung-Jeong Lee, Guee-Sang Kang, Sae-Ryung Kim, Soo-Hyung Front Oncol Oncology Segmentation of liver tumors from Computerized Tomography (CT) images remains a challenge due to the natural variation in tumor shape and structure as well as the noise in CT images. A key assumption is that the performance of liver tumor segmentation depends on the characteristics of multiple features extracted from multiple filters. In this paper, we design an enhanced approach based on a two-class (liver, tumor) convolutional neural network that discriminates tumor as well as liver from CT images. First, the contrast and intensity values in CT images are adjusted and high frequencies are removed using Hounsfield units (HU) filtering and standardization. Then, the liver tumor is segmented from entire images with multiple filter U-net (MFU-net). Finally, a quantitative analysis is carried out to evaluate the segmentation results using three different methods: boundary-distance-based metrics, size-based metrics, and overlap-based metrics. The proposed method is validated on CT images from the 3Dircadb and LiTS dataset. The results demonstrate that the multiple filters are useful for extracting local and global feature simultaneously, minimizing the boundary distance errors, and our approach demonstrates better performance in heterogeneous tumor regions of CT images. Frontiers Media S.A. 2021-10-01 /pmc/articles/PMC8517527/ /pubmed/34660267 http://dx.doi.org/10.3389/fonc.2021.697178 Text en Copyright © 2021 Vo, Yang, Lee, Kang and Kim https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Vo, Vi Thi-Tuong Yang, Hyung-Jeong Lee, Guee-Sang Kang, Sae-Ryung Kim, Soo-Hyung Effects of Multiple Filters on Liver Tumor Segmentation From CT Images |
title | Effects of Multiple Filters on Liver Tumor Segmentation From CT Images |
title_full | Effects of Multiple Filters on Liver Tumor Segmentation From CT Images |
title_fullStr | Effects of Multiple Filters on Liver Tumor Segmentation From CT Images |
title_full_unstemmed | Effects of Multiple Filters on Liver Tumor Segmentation From CT Images |
title_short | Effects of Multiple Filters on Liver Tumor Segmentation From CT Images |
title_sort | effects of multiple filters on liver tumor segmentation from ct images |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8517527/ https://www.ncbi.nlm.nih.gov/pubmed/34660267 http://dx.doi.org/10.3389/fonc.2021.697178 |
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