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Accelerating Reaction Rates of Biomolecules by Using Shear Stress in Artificial Capillary Systems
[Image: see text] Biomimetics is a design principle within chemistry, biology, and engineering, but chemistry biomimetic approaches have been generally limited to emulating nature’s chemical toolkit while emulation of nature’s physical toolkit has remained largely unexplored. To begin to explore thi...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8517977/ https://www.ncbi.nlm.nih.gov/pubmed/34606279 http://dx.doi.org/10.1021/jacs.1c03681 |
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author | Hakala, Tuuli A. Yates, Emma V. Challa, Pavan K. Toprakcioglu, Zenon Nadendla, Karthik Matak-Vinkovic, Dijana Dobson, Christopher M. Martínez, Rodrigo Corzana, Francisco Knowles, Tuomas P. J. Bernardes, Gonçalo J. L. |
author_facet | Hakala, Tuuli A. Yates, Emma V. Challa, Pavan K. Toprakcioglu, Zenon Nadendla, Karthik Matak-Vinkovic, Dijana Dobson, Christopher M. Martínez, Rodrigo Corzana, Francisco Knowles, Tuomas P. J. Bernardes, Gonçalo J. L. |
author_sort | Hakala, Tuuli A. |
collection | PubMed |
description | [Image: see text] Biomimetics is a design principle within chemistry, biology, and engineering, but chemistry biomimetic approaches have been generally limited to emulating nature’s chemical toolkit while emulation of nature’s physical toolkit has remained largely unexplored. To begin to explore this, we designed biophysically mimetic microfluidic reactors with characteristic length scales and shear stresses observed within capillaries. We modeled the effect of shear with molecular dynamics studies and showed that this induces specific normally buried residues to become solvent accessible. We then showed using kinetics experiments that rates of reaction of these specific residues in fact increase in a shear-dependent fashion. We applied our results in the creation of a new microfluidic approach for the multidimensional study of cysteine biomarkers. Finally, we used our approach to establish dissociation of the therapeutic antibody trastuzumab in a reducing environment. Our results have implications for the efficacy of existing therapeutic antibodies in blood plasma as well as suggesting in general that biophysically mimetic chemistry is exploited in biology and should be explored as a research area. |
format | Online Article Text |
id | pubmed-8517977 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-85179772021-10-15 Accelerating Reaction Rates of Biomolecules by Using Shear Stress in Artificial Capillary Systems Hakala, Tuuli A. Yates, Emma V. Challa, Pavan K. Toprakcioglu, Zenon Nadendla, Karthik Matak-Vinkovic, Dijana Dobson, Christopher M. Martínez, Rodrigo Corzana, Francisco Knowles, Tuomas P. J. Bernardes, Gonçalo J. L. J Am Chem Soc [Image: see text] Biomimetics is a design principle within chemistry, biology, and engineering, but chemistry biomimetic approaches have been generally limited to emulating nature’s chemical toolkit while emulation of nature’s physical toolkit has remained largely unexplored. To begin to explore this, we designed biophysically mimetic microfluidic reactors with characteristic length scales and shear stresses observed within capillaries. We modeled the effect of shear with molecular dynamics studies and showed that this induces specific normally buried residues to become solvent accessible. We then showed using kinetics experiments that rates of reaction of these specific residues in fact increase in a shear-dependent fashion. We applied our results in the creation of a new microfluidic approach for the multidimensional study of cysteine biomarkers. Finally, we used our approach to establish dissociation of the therapeutic antibody trastuzumab in a reducing environment. Our results have implications for the efficacy of existing therapeutic antibodies in blood plasma as well as suggesting in general that biophysically mimetic chemistry is exploited in biology and should be explored as a research area. American Chemical Society 2021-10-04 2021-10-13 /pmc/articles/PMC8517977/ /pubmed/34606279 http://dx.doi.org/10.1021/jacs.1c03681 Text en © 2021 American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Hakala, Tuuli A. Yates, Emma V. Challa, Pavan K. Toprakcioglu, Zenon Nadendla, Karthik Matak-Vinkovic, Dijana Dobson, Christopher M. Martínez, Rodrigo Corzana, Francisco Knowles, Tuomas P. J. Bernardes, Gonçalo J. L. Accelerating Reaction Rates of Biomolecules by Using Shear Stress in Artificial Capillary Systems |
title | Accelerating
Reaction Rates of Biomolecules by Using
Shear Stress in Artificial Capillary Systems |
title_full | Accelerating
Reaction Rates of Biomolecules by Using
Shear Stress in Artificial Capillary Systems |
title_fullStr | Accelerating
Reaction Rates of Biomolecules by Using
Shear Stress in Artificial Capillary Systems |
title_full_unstemmed | Accelerating
Reaction Rates of Biomolecules by Using
Shear Stress in Artificial Capillary Systems |
title_short | Accelerating
Reaction Rates of Biomolecules by Using
Shear Stress in Artificial Capillary Systems |
title_sort | accelerating
reaction rates of biomolecules by using
shear stress in artificial capillary systems |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8517977/ https://www.ncbi.nlm.nih.gov/pubmed/34606279 http://dx.doi.org/10.1021/jacs.1c03681 |
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