Cargando…

Accelerating Reaction Rates of Biomolecules by Using Shear Stress in Artificial Capillary Systems

[Image: see text] Biomimetics is a design principle within chemistry, biology, and engineering, but chemistry biomimetic approaches have been generally limited to emulating nature’s chemical toolkit while emulation of nature’s physical toolkit has remained largely unexplored. To begin to explore thi...

Descripción completa

Detalles Bibliográficos
Autores principales: Hakala, Tuuli A., Yates, Emma V., Challa, Pavan K., Toprakcioglu, Zenon, Nadendla, Karthik, Matak-Vinkovic, Dijana, Dobson, Christopher M., Martínez, Rodrigo, Corzana, Francisco, Knowles, Tuomas P. J., Bernardes, Gonçalo J. L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8517977/
https://www.ncbi.nlm.nih.gov/pubmed/34606279
http://dx.doi.org/10.1021/jacs.1c03681
_version_ 1784584123223900160
author Hakala, Tuuli A.
Yates, Emma V.
Challa, Pavan K.
Toprakcioglu, Zenon
Nadendla, Karthik
Matak-Vinkovic, Dijana
Dobson, Christopher M.
Martínez, Rodrigo
Corzana, Francisco
Knowles, Tuomas P. J.
Bernardes, Gonçalo J. L.
author_facet Hakala, Tuuli A.
Yates, Emma V.
Challa, Pavan K.
Toprakcioglu, Zenon
Nadendla, Karthik
Matak-Vinkovic, Dijana
Dobson, Christopher M.
Martínez, Rodrigo
Corzana, Francisco
Knowles, Tuomas P. J.
Bernardes, Gonçalo J. L.
author_sort Hakala, Tuuli A.
collection PubMed
description [Image: see text] Biomimetics is a design principle within chemistry, biology, and engineering, but chemistry biomimetic approaches have been generally limited to emulating nature’s chemical toolkit while emulation of nature’s physical toolkit has remained largely unexplored. To begin to explore this, we designed biophysically mimetic microfluidic reactors with characteristic length scales and shear stresses observed within capillaries. We modeled the effect of shear with molecular dynamics studies and showed that this induces specific normally buried residues to become solvent accessible. We then showed using kinetics experiments that rates of reaction of these specific residues in fact increase in a shear-dependent fashion. We applied our results in the creation of a new microfluidic approach for the multidimensional study of cysteine biomarkers. Finally, we used our approach to establish dissociation of the therapeutic antibody trastuzumab in a reducing environment. Our results have implications for the efficacy of existing therapeutic antibodies in blood plasma as well as suggesting in general that biophysically mimetic chemistry is exploited in biology and should be explored as a research area.
format Online
Article
Text
id pubmed-8517977
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-85179772021-10-15 Accelerating Reaction Rates of Biomolecules by Using Shear Stress in Artificial Capillary Systems Hakala, Tuuli A. Yates, Emma V. Challa, Pavan K. Toprakcioglu, Zenon Nadendla, Karthik Matak-Vinkovic, Dijana Dobson, Christopher M. Martínez, Rodrigo Corzana, Francisco Knowles, Tuomas P. J. Bernardes, Gonçalo J. L. J Am Chem Soc [Image: see text] Biomimetics is a design principle within chemistry, biology, and engineering, but chemistry biomimetic approaches have been generally limited to emulating nature’s chemical toolkit while emulation of nature’s physical toolkit has remained largely unexplored. To begin to explore this, we designed biophysically mimetic microfluidic reactors with characteristic length scales and shear stresses observed within capillaries. We modeled the effect of shear with molecular dynamics studies and showed that this induces specific normally buried residues to become solvent accessible. We then showed using kinetics experiments that rates of reaction of these specific residues in fact increase in a shear-dependent fashion. We applied our results in the creation of a new microfluidic approach for the multidimensional study of cysteine biomarkers. Finally, we used our approach to establish dissociation of the therapeutic antibody trastuzumab in a reducing environment. Our results have implications for the efficacy of existing therapeutic antibodies in blood plasma as well as suggesting in general that biophysically mimetic chemistry is exploited in biology and should be explored as a research area. American Chemical Society 2021-10-04 2021-10-13 /pmc/articles/PMC8517977/ /pubmed/34606279 http://dx.doi.org/10.1021/jacs.1c03681 Text en © 2021 American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Hakala, Tuuli A.
Yates, Emma V.
Challa, Pavan K.
Toprakcioglu, Zenon
Nadendla, Karthik
Matak-Vinkovic, Dijana
Dobson, Christopher M.
Martínez, Rodrigo
Corzana, Francisco
Knowles, Tuomas P. J.
Bernardes, Gonçalo J. L.
Accelerating Reaction Rates of Biomolecules by Using Shear Stress in Artificial Capillary Systems
title Accelerating Reaction Rates of Biomolecules by Using Shear Stress in Artificial Capillary Systems
title_full Accelerating Reaction Rates of Biomolecules by Using Shear Stress in Artificial Capillary Systems
title_fullStr Accelerating Reaction Rates of Biomolecules by Using Shear Stress in Artificial Capillary Systems
title_full_unstemmed Accelerating Reaction Rates of Biomolecules by Using Shear Stress in Artificial Capillary Systems
title_short Accelerating Reaction Rates of Biomolecules by Using Shear Stress in Artificial Capillary Systems
title_sort accelerating reaction rates of biomolecules by using shear stress in artificial capillary systems
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8517977/
https://www.ncbi.nlm.nih.gov/pubmed/34606279
http://dx.doi.org/10.1021/jacs.1c03681
work_keys_str_mv AT hakalatuulia acceleratingreactionratesofbiomoleculesbyusingshearstressinartificialcapillarysystems
AT yatesemmav acceleratingreactionratesofbiomoleculesbyusingshearstressinartificialcapillarysystems
AT challapavank acceleratingreactionratesofbiomoleculesbyusingshearstressinartificialcapillarysystems
AT toprakciogluzenon acceleratingreactionratesofbiomoleculesbyusingshearstressinartificialcapillarysystems
AT nadendlakarthik acceleratingreactionratesofbiomoleculesbyusingshearstressinartificialcapillarysystems
AT matakvinkovicdijana acceleratingreactionratesofbiomoleculesbyusingshearstressinartificialcapillarysystems
AT dobsonchristopherm acceleratingreactionratesofbiomoleculesbyusingshearstressinartificialcapillarysystems
AT martinezrodrigo acceleratingreactionratesofbiomoleculesbyusingshearstressinartificialcapillarysystems
AT corzanafrancisco acceleratingreactionratesofbiomoleculesbyusingshearstressinartificialcapillarysystems
AT knowlestuomaspj acceleratingreactionratesofbiomoleculesbyusingshearstressinartificialcapillarysystems
AT bernardesgoncalojl acceleratingreactionratesofbiomoleculesbyusingshearstressinartificialcapillarysystems