Cargando…
EMX2OS plays a prognosis-associated enhancer RNA role in gastric cancer
Enhancer RNAs (eRNAs), a subclass of lncRNAs, are derived from enhancer regions. The function of eRNAs has been reported by many previous studies. However, the role of eRNAs in gastric cancer, especially the prognosis-associated eRNAs, has not been studied yet. In this study, we have used a novel ap...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8519253/ https://www.ncbi.nlm.nih.gov/pubmed/34731149 http://dx.doi.org/10.1097/MD.0000000000027535 |
_version_ | 1784584414408212480 |
---|---|
author | Liu, Ge-Xin Tan, Yu-Zhen He, Guo-Chao Zhang, Qin-Lin Liu, Pan |
author_facet | Liu, Ge-Xin Tan, Yu-Zhen He, Guo-Chao Zhang, Qin-Lin Liu, Pan |
author_sort | Liu, Ge-Xin |
collection | PubMed |
description | Enhancer RNAs (eRNAs), a subclass of lncRNAs, are derived from enhancer regions. The function of eRNAs has been reported by many previous studies. However, the role of eRNAs in gastric cancer, especially the prognosis-associated eRNAs, has not been studied yet. In this study, we have used a novel approach to screened key eRNAs in gastric cancer. Kaplan–Meier correlation analysis and Co-expression analysis were used to find the most significant survival-associated eRNAs. Enrichment analysis is applied to explore the key functions and pathways of screened eRNAs. The correlation and survival analysis are used to evaluate targeted genes in the pan-cancer analysis A total of 63 prognostic-associated eRNAs in gastric cancer were identified, the top 6 eRNAs were LINC01714, ZNF192P1, AC079760.2, LINC01645, EMX2OS, and AC114489.2. The correlation analysis demonstrated the top 10 screened eRNAs and their targeted genes. The results demonstrated that EMX2OS was ranked as the top eRNA according to the results of the Kaplan–Meier analysis. The correlation analysis demonstrated that eRNA EMX2OS is correlated with age, grade, stage, and cancer status. The pan-cancer analysis demonstrated that EMX2OS was associated with poor survival outcomes in adrenocortical carcinoma, cervical squamous cell carcinoma and endocervical adenocarcinoma, kidney renal clear cell carcinoma, stomach adenocarcinoma, and uveal melanoma. In this study, survival-related eRNAs were screened and the correlation between survival-related eRNAs and their targeted genes was demonstrated. EMX2OS plays a prognosis-associated eRNA role in gastric cancer, which might be a novel therapeutic target in clinical practice. |
format | Online Article Text |
id | pubmed-8519253 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-85192532021-10-18 EMX2OS plays a prognosis-associated enhancer RNA role in gastric cancer Liu, Ge-Xin Tan, Yu-Zhen He, Guo-Chao Zhang, Qin-Lin Liu, Pan Medicine (Baltimore) 4500 Enhancer RNAs (eRNAs), a subclass of lncRNAs, are derived from enhancer regions. The function of eRNAs has been reported by many previous studies. However, the role of eRNAs in gastric cancer, especially the prognosis-associated eRNAs, has not been studied yet. In this study, we have used a novel approach to screened key eRNAs in gastric cancer. Kaplan–Meier correlation analysis and Co-expression analysis were used to find the most significant survival-associated eRNAs. Enrichment analysis is applied to explore the key functions and pathways of screened eRNAs. The correlation and survival analysis are used to evaluate targeted genes in the pan-cancer analysis A total of 63 prognostic-associated eRNAs in gastric cancer were identified, the top 6 eRNAs were LINC01714, ZNF192P1, AC079760.2, LINC01645, EMX2OS, and AC114489.2. The correlation analysis demonstrated the top 10 screened eRNAs and their targeted genes. The results demonstrated that EMX2OS was ranked as the top eRNA according to the results of the Kaplan–Meier analysis. The correlation analysis demonstrated that eRNA EMX2OS is correlated with age, grade, stage, and cancer status. The pan-cancer analysis demonstrated that EMX2OS was associated with poor survival outcomes in adrenocortical carcinoma, cervical squamous cell carcinoma and endocervical adenocarcinoma, kidney renal clear cell carcinoma, stomach adenocarcinoma, and uveal melanoma. In this study, survival-related eRNAs were screened and the correlation between survival-related eRNAs and their targeted genes was demonstrated. EMX2OS plays a prognosis-associated eRNA role in gastric cancer, which might be a novel therapeutic target in clinical practice. Lippincott Williams & Wilkins 2021-10-15 /pmc/articles/PMC8519253/ /pubmed/34731149 http://dx.doi.org/10.1097/MD.0000000000027535 Text en Copyright © 2021 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/licenses/by/4.0 (https://creativecommons.org/licenses/by/4.0/) |
spellingShingle | 4500 Liu, Ge-Xin Tan, Yu-Zhen He, Guo-Chao Zhang, Qin-Lin Liu, Pan EMX2OS plays a prognosis-associated enhancer RNA role in gastric cancer |
title | EMX2OS plays a prognosis-associated enhancer RNA role in gastric cancer |
title_full | EMX2OS plays a prognosis-associated enhancer RNA role in gastric cancer |
title_fullStr | EMX2OS plays a prognosis-associated enhancer RNA role in gastric cancer |
title_full_unstemmed | EMX2OS plays a prognosis-associated enhancer RNA role in gastric cancer |
title_short | EMX2OS plays a prognosis-associated enhancer RNA role in gastric cancer |
title_sort | emx2os plays a prognosis-associated enhancer rna role in gastric cancer |
topic | 4500 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8519253/ https://www.ncbi.nlm.nih.gov/pubmed/34731149 http://dx.doi.org/10.1097/MD.0000000000027535 |
work_keys_str_mv | AT liugexin emx2osplaysaprognosisassociatedenhancerrnaroleingastriccancer AT tanyuzhen emx2osplaysaprognosisassociatedenhancerrnaroleingastriccancer AT heguochao emx2osplaysaprognosisassociatedenhancerrnaroleingastriccancer AT zhangqinlin emx2osplaysaprognosisassociatedenhancerrnaroleingastriccancer AT liupan emx2osplaysaprognosisassociatedenhancerrnaroleingastriccancer |