Cargando…
Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae)
We report complete chloroplast genome (plastome) sequences of Stylidium debile (150,105 bp) and Stylidium petiolare (150,998 bp). Both plastomes had the typical quadripartite structure, with large single-copy (LSC) and small single-copy (SSC) regions separated by two inverted repeat (IR) regions. Bo...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8519543/ https://www.ncbi.nlm.nih.gov/pubmed/34660891 http://dx.doi.org/10.1080/23802359.2021.1985403 |
_version_ | 1784584472700649472 |
---|---|
author | Li, Lin Liu, Guo-Ming Zhang, Zhi-Rong Corlett, Richard T. Yu, Wen-Bin |
author_facet | Li, Lin Liu, Guo-Ming Zhang, Zhi-Rong Corlett, Richard T. Yu, Wen-Bin |
author_sort | Li, Lin |
collection | PubMed |
description | We report complete chloroplast genome (plastome) sequences of Stylidium debile (150,105 bp) and Stylidium petiolare (150,998 bp). Both plastomes had the typical quadripartite structure, with large single-copy (LSC) and small single-copy (SSC) regions separated by two inverted repeat (IR) regions. Both plastomes have lost the rps19 and ycf15 CDS genes, and had infA-like, rps22-like, and rps7-like pseudogenes. Moreover, IR regions were expanded by having trnH(GUG) tRNA and the rps22-like pseudogene. Plastome phylogenomic analyses showed that the two Stylidium species formed a monophyletic clade (BS = 100), sister to the Argophyllaceae (BS = 86/83). Sequence differences between the two Stylidium plastomes were 5011 sites, including 2166 variable sites and 2845 indels, with the petA-psbJ spacer the most variable region, followed by the trnK(UUU)-matK intron and trnG(UUG)-rps16 spacer. |
format | Online Article Text |
id | pubmed-8519543 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-85195432021-10-16 Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae) Li, Lin Liu, Guo-Ming Zhang, Zhi-Rong Corlett, Richard T. Yu, Wen-Bin Mitochondrial DNA B Resour Mitogenome Announcement We report complete chloroplast genome (plastome) sequences of Stylidium debile (150,105 bp) and Stylidium petiolare (150,998 bp). Both plastomes had the typical quadripartite structure, with large single-copy (LSC) and small single-copy (SSC) regions separated by two inverted repeat (IR) regions. Both plastomes have lost the rps19 and ycf15 CDS genes, and had infA-like, rps22-like, and rps7-like pseudogenes. Moreover, IR regions were expanded by having trnH(GUG) tRNA and the rps22-like pseudogene. Plastome phylogenomic analyses showed that the two Stylidium species formed a monophyletic clade (BS = 100), sister to the Argophyllaceae (BS = 86/83). Sequence differences between the two Stylidium plastomes were 5011 sites, including 2166 variable sites and 2845 indels, with the petA-psbJ spacer the most variable region, followed by the trnK(UUU)-matK intron and trnG(UUG)-rps16 spacer. Taylor & Francis 2021-10-07 /pmc/articles/PMC8519543/ /pubmed/34660891 http://dx.doi.org/10.1080/23802359.2021.1985403 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Li, Lin Liu, Guo-Ming Zhang, Zhi-Rong Corlett, Richard T. Yu, Wen-Bin Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae) |
title | Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae) |
title_full | Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae) |
title_fullStr | Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae) |
title_full_unstemmed | Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae) |
title_short | Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae) |
title_sort | characteristics of the complete chloroplast genome sequences of stylidium debile and stylidium petiolare (stylidiaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8519543/ https://www.ncbi.nlm.nih.gov/pubmed/34660891 http://dx.doi.org/10.1080/23802359.2021.1985403 |
work_keys_str_mv | AT lilin characteristicsofthecompletechloroplastgenomesequencesofstylidiumdebileandstylidiumpetiolarestylidiaceae AT liuguoming characteristicsofthecompletechloroplastgenomesequencesofstylidiumdebileandstylidiumpetiolarestylidiaceae AT zhangzhirong characteristicsofthecompletechloroplastgenomesequencesofstylidiumdebileandstylidiumpetiolarestylidiaceae AT corlettrichardt characteristicsofthecompletechloroplastgenomesequencesofstylidiumdebileandstylidiumpetiolarestylidiaceae AT yuwenbin characteristicsofthecompletechloroplastgenomesequencesofstylidiumdebileandstylidiumpetiolarestylidiaceae |