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Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae)

We report complete chloroplast genome (plastome) sequences of Stylidium debile (150,105 bp) and Stylidium petiolare (150,998 bp). Both plastomes had the typical quadripartite structure, with large single-copy (LSC) and small single-copy (SSC) regions separated by two inverted repeat (IR) regions. Bo...

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Autores principales: Li, Lin, Liu, Guo-Ming, Zhang, Zhi-Rong, Corlett, Richard T., Yu, Wen-Bin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8519543/
https://www.ncbi.nlm.nih.gov/pubmed/34660891
http://dx.doi.org/10.1080/23802359.2021.1985403
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author Li, Lin
Liu, Guo-Ming
Zhang, Zhi-Rong
Corlett, Richard T.
Yu, Wen-Bin
author_facet Li, Lin
Liu, Guo-Ming
Zhang, Zhi-Rong
Corlett, Richard T.
Yu, Wen-Bin
author_sort Li, Lin
collection PubMed
description We report complete chloroplast genome (plastome) sequences of Stylidium debile (150,105 bp) and Stylidium petiolare (150,998 bp). Both plastomes had the typical quadripartite structure, with large single-copy (LSC) and small single-copy (SSC) regions separated by two inverted repeat (IR) regions. Both plastomes have lost the rps19 and ycf15 CDS genes, and had infA-like, rps22-like, and rps7-like pseudogenes. Moreover, IR regions were expanded by having trnH(GUG) tRNA and the rps22-like pseudogene. Plastome phylogenomic analyses showed that the two Stylidium species formed a monophyletic clade (BS = 100), sister to the Argophyllaceae (BS = 86/83). Sequence differences between the two Stylidium plastomes were 5011 sites, including 2166 variable sites and 2845 indels, with the petA-psbJ spacer the most variable region, followed by the trnK(UUU)-matK intron and trnG(UUG)-rps16 spacer.
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spelling pubmed-85195432021-10-16 Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae) Li, Lin Liu, Guo-Ming Zhang, Zhi-Rong Corlett, Richard T. Yu, Wen-Bin Mitochondrial DNA B Resour Mitogenome Announcement We report complete chloroplast genome (plastome) sequences of Stylidium debile (150,105 bp) and Stylidium petiolare (150,998 bp). Both plastomes had the typical quadripartite structure, with large single-copy (LSC) and small single-copy (SSC) regions separated by two inverted repeat (IR) regions. Both plastomes have lost the rps19 and ycf15 CDS genes, and had infA-like, rps22-like, and rps7-like pseudogenes. Moreover, IR regions were expanded by having trnH(GUG) tRNA and the rps22-like pseudogene. Plastome phylogenomic analyses showed that the two Stylidium species formed a monophyletic clade (BS = 100), sister to the Argophyllaceae (BS = 86/83). Sequence differences between the two Stylidium plastomes were 5011 sites, including 2166 variable sites and 2845 indels, with the petA-psbJ spacer the most variable region, followed by the trnK(UUU)-matK intron and trnG(UUG)-rps16 spacer. Taylor & Francis 2021-10-07 /pmc/articles/PMC8519543/ /pubmed/34660891 http://dx.doi.org/10.1080/23802359.2021.1985403 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Li, Lin
Liu, Guo-Ming
Zhang, Zhi-Rong
Corlett, Richard T.
Yu, Wen-Bin
Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae)
title Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae)
title_full Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae)
title_fullStr Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae)
title_full_unstemmed Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae)
title_short Characteristics of the complete chloroplast genome sequences of Stylidium debile and Stylidium petiolare (Stylidiaceae)
title_sort characteristics of the complete chloroplast genome sequences of stylidium debile and stylidium petiolare (stylidiaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8519543/
https://www.ncbi.nlm.nih.gov/pubmed/34660891
http://dx.doi.org/10.1080/23802359.2021.1985403
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