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Comparison of traveling‐subject and ComBat harmonization methods for assessing structural brain characteristics
Multisite magnetic resonance imaging (MRI) is increasingly used in clinical research and development. Measurement biases—caused by site differences in scanner/image‐acquisition protocols—negatively influence the reliability and reproducibility of image‐analysis methods. Harmonization can reduce bias...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8519865/ https://www.ncbi.nlm.nih.gov/pubmed/34402132 http://dx.doi.org/10.1002/hbm.25615 |
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author | Maikusa, Norihide Zhu, Yinghan Uematsu, Akiko Yamashita, Ayumu Saotome, Kousaku Okada, Naohiro Kasai, Kiyoto Okanoya, Kazuo Yamashita, Okito Tanaka, Saori C. Koike, Shinsuke |
author_facet | Maikusa, Norihide Zhu, Yinghan Uematsu, Akiko Yamashita, Ayumu Saotome, Kousaku Okada, Naohiro Kasai, Kiyoto Okanoya, Kazuo Yamashita, Okito Tanaka, Saori C. Koike, Shinsuke |
author_sort | Maikusa, Norihide |
collection | PubMed |
description | Multisite magnetic resonance imaging (MRI) is increasingly used in clinical research and development. Measurement biases—caused by site differences in scanner/image‐acquisition protocols—negatively influence the reliability and reproducibility of image‐analysis methods. Harmonization can reduce bias and improve the reproducibility of multisite datasets. Herein, a traveling‐subject (TS) dataset including 56 T1‐weighted MRI scans of 20 healthy participants in three different MRI procedures—20, 19, and 17 subjects in Procedures 1, 2, and 3, respectively—was considered to compare the reproducibility of TS‐GLM, ComBat, and TS‐ComBat harmonization methods. The minimum participant count required for harmonization was determined, and the Cohen's d between different MRI procedures was evaluated as a measurement‐bias indicator. The measurement‐bias reduction realized with different methods was evaluated by comparing test–retest scans for 20 healthy participants. Moreover, the minimum subject count for harmonization was determined by comparing test–retest datasets. The results revealed that TS‐GLM and TS‐ComBat reduced measurement bias by up to 85 and 81.3%, respectively. Meanwhile, ComBat showed a reduction of only 59.0%. At least 6 TSs were required to harmonize data obtained from different MRI scanners, complying with the imaging protocol predetermined for multisite investigations and operated with similar scan parameters. The results indicate that TS‐based harmonization outperforms ComBat for measurement‐bias reduction and is optimal for MRI data in well‐prepared multisite investigations. One drawback is the small sample size used, potentially limiting the applicability of ComBat. Investigation on the number of subjects needed for a large‐scale study is an interesting future problem. |
format | Online Article Text |
id | pubmed-8519865 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-85198652021-10-22 Comparison of traveling‐subject and ComBat harmonization methods for assessing structural brain characteristics Maikusa, Norihide Zhu, Yinghan Uematsu, Akiko Yamashita, Ayumu Saotome, Kousaku Okada, Naohiro Kasai, Kiyoto Okanoya, Kazuo Yamashita, Okito Tanaka, Saori C. Koike, Shinsuke Hum Brain Mapp Research Articles Multisite magnetic resonance imaging (MRI) is increasingly used in clinical research and development. Measurement biases—caused by site differences in scanner/image‐acquisition protocols—negatively influence the reliability and reproducibility of image‐analysis methods. Harmonization can reduce bias and improve the reproducibility of multisite datasets. Herein, a traveling‐subject (TS) dataset including 56 T1‐weighted MRI scans of 20 healthy participants in three different MRI procedures—20, 19, and 17 subjects in Procedures 1, 2, and 3, respectively—was considered to compare the reproducibility of TS‐GLM, ComBat, and TS‐ComBat harmonization methods. The minimum participant count required for harmonization was determined, and the Cohen's d between different MRI procedures was evaluated as a measurement‐bias indicator. The measurement‐bias reduction realized with different methods was evaluated by comparing test–retest scans for 20 healthy participants. Moreover, the minimum subject count for harmonization was determined by comparing test–retest datasets. The results revealed that TS‐GLM and TS‐ComBat reduced measurement bias by up to 85 and 81.3%, respectively. Meanwhile, ComBat showed a reduction of only 59.0%. At least 6 TSs were required to harmonize data obtained from different MRI scanners, complying with the imaging protocol predetermined for multisite investigations and operated with similar scan parameters. The results indicate that TS‐based harmonization outperforms ComBat for measurement‐bias reduction and is optimal for MRI data in well‐prepared multisite investigations. One drawback is the small sample size used, potentially limiting the applicability of ComBat. Investigation on the number of subjects needed for a large‐scale study is an interesting future problem. John Wiley & Sons, Inc. 2021-08-17 /pmc/articles/PMC8519865/ /pubmed/34402132 http://dx.doi.org/10.1002/hbm.25615 Text en © 2021 The Authors. Human Brain Mapping published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Maikusa, Norihide Zhu, Yinghan Uematsu, Akiko Yamashita, Ayumu Saotome, Kousaku Okada, Naohiro Kasai, Kiyoto Okanoya, Kazuo Yamashita, Okito Tanaka, Saori C. Koike, Shinsuke Comparison of traveling‐subject and ComBat harmonization methods for assessing structural brain characteristics |
title | Comparison of traveling‐subject and ComBat harmonization methods for assessing structural brain characteristics |
title_full | Comparison of traveling‐subject and ComBat harmonization methods for assessing structural brain characteristics |
title_fullStr | Comparison of traveling‐subject and ComBat harmonization methods for assessing structural brain characteristics |
title_full_unstemmed | Comparison of traveling‐subject and ComBat harmonization methods for assessing structural brain characteristics |
title_short | Comparison of traveling‐subject and ComBat harmonization methods for assessing structural brain characteristics |
title_sort | comparison of traveling‐subject and combat harmonization methods for assessing structural brain characteristics |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8519865/ https://www.ncbi.nlm.nih.gov/pubmed/34402132 http://dx.doi.org/10.1002/hbm.25615 |
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