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U-Net combined with multi-scale attention mechanism for liver segmentation in CT images

The liver is an important organ that undertakes the metabolic function of the human body. Liver cancer has become one of the cancers with the highest mortality. In clinic, it is an important work to extract the liver region accurately before the diagnosis and treatment of liver lesions. However, man...

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Autores principales: Wu, Jiawei, Zhou, Shengqiang, Zuo, Songlin, Chen, Yiyin, Sun, Weiqin, Luo, Jiang, Duan, Jiantuan, Wang, Hui, Wang, Deguang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8520298/
https://www.ncbi.nlm.nih.gov/pubmed/34654419
http://dx.doi.org/10.1186/s12911-021-01649-w
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author Wu, Jiawei
Zhou, Shengqiang
Zuo, Songlin
Chen, Yiyin
Sun, Weiqin
Luo, Jiang
Duan, Jiantuan
Wang, Hui
Wang, Deguang
author_facet Wu, Jiawei
Zhou, Shengqiang
Zuo, Songlin
Chen, Yiyin
Sun, Weiqin
Luo, Jiang
Duan, Jiantuan
Wang, Hui
Wang, Deguang
author_sort Wu, Jiawei
collection PubMed
description The liver is an important organ that undertakes the metabolic function of the human body. Liver cancer has become one of the cancers with the highest mortality. In clinic, it is an important work to extract the liver region accurately before the diagnosis and treatment of liver lesions. However, manual liver segmentation is a time-consuming and boring process. Not only that, but the segmentation results usually varies from person to person due to different work experience. In order to assist in clinical automatic liver segmentation, this paper proposes a U-shaped network with multi-scale attention mechanism for liver organ segmentation in CT images, which is called MSA-UNet. Our method makes a new design of U-Net encoder, decoder, skip connection, and context transition structure. These structures greatly enhance the feature extraction ability of encoder and the efficiency of decoder to recover spatial location information. We have designed many experiments on publicly available datasets to show the effectiveness of MSA-UNet. Compared with some other advanced segmentation methods, MSA-UNet finally achieved the best segmentation effect, reaching 98.00% dice similarity coefficient (DSC) and 96.08% intersection over union (IOU).
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spelling pubmed-85202982021-10-20 U-Net combined with multi-scale attention mechanism for liver segmentation in CT images Wu, Jiawei Zhou, Shengqiang Zuo, Songlin Chen, Yiyin Sun, Weiqin Luo, Jiang Duan, Jiantuan Wang, Hui Wang, Deguang BMC Med Inform Decis Mak Research The liver is an important organ that undertakes the metabolic function of the human body. Liver cancer has become one of the cancers with the highest mortality. In clinic, it is an important work to extract the liver region accurately before the diagnosis and treatment of liver lesions. However, manual liver segmentation is a time-consuming and boring process. Not only that, but the segmentation results usually varies from person to person due to different work experience. In order to assist in clinical automatic liver segmentation, this paper proposes a U-shaped network with multi-scale attention mechanism for liver organ segmentation in CT images, which is called MSA-UNet. Our method makes a new design of U-Net encoder, decoder, skip connection, and context transition structure. These structures greatly enhance the feature extraction ability of encoder and the efficiency of decoder to recover spatial location information. We have designed many experiments on publicly available datasets to show the effectiveness of MSA-UNet. Compared with some other advanced segmentation methods, MSA-UNet finally achieved the best segmentation effect, reaching 98.00% dice similarity coefficient (DSC) and 96.08% intersection over union (IOU). BioMed Central 2021-10-15 /pmc/articles/PMC8520298/ /pubmed/34654419 http://dx.doi.org/10.1186/s12911-021-01649-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Wu, Jiawei
Zhou, Shengqiang
Zuo, Songlin
Chen, Yiyin
Sun, Weiqin
Luo, Jiang
Duan, Jiantuan
Wang, Hui
Wang, Deguang
U-Net combined with multi-scale attention mechanism for liver segmentation in CT images
title U-Net combined with multi-scale attention mechanism for liver segmentation in CT images
title_full U-Net combined with multi-scale attention mechanism for liver segmentation in CT images
title_fullStr U-Net combined with multi-scale attention mechanism for liver segmentation in CT images
title_full_unstemmed U-Net combined with multi-scale attention mechanism for liver segmentation in CT images
title_short U-Net combined with multi-scale attention mechanism for liver segmentation in CT images
title_sort u-net combined with multi-scale attention mechanism for liver segmentation in ct images
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8520298/
https://www.ncbi.nlm.nih.gov/pubmed/34654419
http://dx.doi.org/10.1186/s12911-021-01649-w
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