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Genome sequencing of turmeric provides evolutionary insights into its medicinal properties
Curcuma longa, or turmeric, is traditionally known for its immense medicinal properties and has diverse therapeutic applications. However, the absence of a reference genome sequence is a limiting factor in understanding the genomic basis of the origin of its medicinal properties. In this study, we p...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8521574/ https://www.ncbi.nlm.nih.gov/pubmed/34654884 http://dx.doi.org/10.1038/s42003-021-02720-y |
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author | Chakraborty, Abhisek Mahajan, Shruti Jaiswal, Shubham K. Sharma, Vineet K. |
author_facet | Chakraborty, Abhisek Mahajan, Shruti Jaiswal, Shubham K. Sharma, Vineet K. |
author_sort | Chakraborty, Abhisek |
collection | PubMed |
description | Curcuma longa, or turmeric, is traditionally known for its immense medicinal properties and has diverse therapeutic applications. However, the absence of a reference genome sequence is a limiting factor in understanding the genomic basis of the origin of its medicinal properties. In this study, we present the draft genome sequence of C. longa, belonging to Zingiberaceae plant family, constructed using 10x Genomics linked reads and Oxford Nanopore long reads. For comprehensive gene set prediction and for insights into its gene expression, transcriptome sequencing of leaf tissue was also performed. The draft genome assembly had a size of 1.02 Gbp with ~70% repetitive sequences, and contained 50,401 coding gene sequences. The phylogenetic position of C. longa was resolved through a comprehensive genome-wide analysis including 16 other plant species. Using 5,388 orthogroups, the comparative evolutionary analysis performed across 17 species including C. longa revealed evolution in genes associated with secondary metabolism, plant phytohormones signaling, and various biotic and abiotic stress tolerance responses. These mechanisms are crucial for perennial and rhizomatous plants such as C. longa for defense and environmental stress tolerance via production of secondary metabolites, which are associated with the wide range of medicinal properties in C. longa. |
format | Online Article Text |
id | pubmed-8521574 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-85215742021-10-29 Genome sequencing of turmeric provides evolutionary insights into its medicinal properties Chakraborty, Abhisek Mahajan, Shruti Jaiswal, Shubham K. Sharma, Vineet K. Commun Biol Article Curcuma longa, or turmeric, is traditionally known for its immense medicinal properties and has diverse therapeutic applications. However, the absence of a reference genome sequence is a limiting factor in understanding the genomic basis of the origin of its medicinal properties. In this study, we present the draft genome sequence of C. longa, belonging to Zingiberaceae plant family, constructed using 10x Genomics linked reads and Oxford Nanopore long reads. For comprehensive gene set prediction and for insights into its gene expression, transcriptome sequencing of leaf tissue was also performed. The draft genome assembly had a size of 1.02 Gbp with ~70% repetitive sequences, and contained 50,401 coding gene sequences. The phylogenetic position of C. longa was resolved through a comprehensive genome-wide analysis including 16 other plant species. Using 5,388 orthogroups, the comparative evolutionary analysis performed across 17 species including C. longa revealed evolution in genes associated with secondary metabolism, plant phytohormones signaling, and various biotic and abiotic stress tolerance responses. These mechanisms are crucial for perennial and rhizomatous plants such as C. longa for defense and environmental stress tolerance via production of secondary metabolites, which are associated with the wide range of medicinal properties in C. longa. Nature Publishing Group UK 2021-10-15 /pmc/articles/PMC8521574/ /pubmed/34654884 http://dx.doi.org/10.1038/s42003-021-02720-y Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Chakraborty, Abhisek Mahajan, Shruti Jaiswal, Shubham K. Sharma, Vineet K. Genome sequencing of turmeric provides evolutionary insights into its medicinal properties |
title | Genome sequencing of turmeric provides evolutionary insights into its medicinal properties |
title_full | Genome sequencing of turmeric provides evolutionary insights into its medicinal properties |
title_fullStr | Genome sequencing of turmeric provides evolutionary insights into its medicinal properties |
title_full_unstemmed | Genome sequencing of turmeric provides evolutionary insights into its medicinal properties |
title_short | Genome sequencing of turmeric provides evolutionary insights into its medicinal properties |
title_sort | genome sequencing of turmeric provides evolutionary insights into its medicinal properties |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8521574/ https://www.ncbi.nlm.nih.gov/pubmed/34654884 http://dx.doi.org/10.1038/s42003-021-02720-y |
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