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Comparison of MICs in Escherichia coli isolates from human health surveillance with MICs obtained for the same isolates by broth microdilution

OBJECTIVES: Human health surveillance and food safety monitoring systems use different antimicrobial susceptibility testing (AST) methods. In this study, we compared the MICs of Escherichia coli isolates provided by these methods. METHODS: E. coli isolates (n = 120) from human urine samples and thei...

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Autores principales: Suwono, Beneditta, Hammerl, Jens André, Eckmanns, Tim, Merle, Roswitha, Eigner, Ulrich, Lümen, Michaela, Lauter, Sven, Stock, Rüdiger, Fenner, Ines, Boemke, Eva, Tenhagen, Bernd-Alois
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8524623/
https://www.ncbi.nlm.nih.gov/pubmed/34676365
http://dx.doi.org/10.1093/jacamr/dlab145
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author Suwono, Beneditta
Hammerl, Jens André
Eckmanns, Tim
Merle, Roswitha
Eigner, Ulrich
Lümen, Michaela
Lauter, Sven
Stock, Rüdiger
Fenner, Ines
Boemke, Eva
Tenhagen, Bernd-Alois
author_facet Suwono, Beneditta
Hammerl, Jens André
Eckmanns, Tim
Merle, Roswitha
Eigner, Ulrich
Lümen, Michaela
Lauter, Sven
Stock, Rüdiger
Fenner, Ines
Boemke, Eva
Tenhagen, Bernd-Alois
author_sort Suwono, Beneditta
collection PubMed
description OBJECTIVES: Human health surveillance and food safety monitoring systems use different antimicrobial susceptibility testing (AST) methods. In this study, we compared the MICs of Escherichia coli isolates provided by these methods. METHODS: E. coli isolates (n = 120) from human urine samples and their MICs were collected from six medical laboratories that used automated AST methods based on bacterial growth kinetic analyses. These isolates were retested using broth microdilution, which is used by the food safety monitoring system. The essential and categorical agreements (EA and CA), very major errors (VME), major errors (ME) and minor errors (mE) for these two methods were calculated for 11 antibiotics using broth microdilution as a reference. For statistical analysis, clinical breakpoints provided by EUCAST were used. RESULTS: Five study laboratories used VITEK(®)2 and one MicroScan (Walkaway Combo Panel). Out of 120 isolates, 118 isolates (98.3%) were confirmed as E. coli. The 99 E. coli isolates from five study laboratories that used VITEK(®)2 showed high proportions of EA and CA with full agreements for gentamicin, meropenem, imipenem and ertapenem. Additionally, 100% CA was also observed in cefepime. Few VME (0.5%), ME (1.9%) and mE (1.5%) were observed across all antibiotics. One VME for ceftazidime (7.1%) and 12 MEs for ampicillin (29.4%), cefotaxime (2.4%), ciprofloxacin (3.2%), tigecycline (1.5%) and trimethoprim (22.2%) were detected. CONCLUSIONS: MICs from E. coli isolates produced by VITEK(®)2 were similar to those determined by broth microdilution. These results will be valuable for comparative analyses of resistance data from human health surveillance and food safety monitoring systems.
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spelling pubmed-85246232021-10-20 Comparison of MICs in Escherichia coli isolates from human health surveillance with MICs obtained for the same isolates by broth microdilution Suwono, Beneditta Hammerl, Jens André Eckmanns, Tim Merle, Roswitha Eigner, Ulrich Lümen, Michaela Lauter, Sven Stock, Rüdiger Fenner, Ines Boemke, Eva Tenhagen, Bernd-Alois JAC Antimicrob Resist Brief Report OBJECTIVES: Human health surveillance and food safety monitoring systems use different antimicrobial susceptibility testing (AST) methods. In this study, we compared the MICs of Escherichia coli isolates provided by these methods. METHODS: E. coli isolates (n = 120) from human urine samples and their MICs were collected from six medical laboratories that used automated AST methods based on bacterial growth kinetic analyses. These isolates were retested using broth microdilution, which is used by the food safety monitoring system. The essential and categorical agreements (EA and CA), very major errors (VME), major errors (ME) and minor errors (mE) for these two methods were calculated for 11 antibiotics using broth microdilution as a reference. For statistical analysis, clinical breakpoints provided by EUCAST were used. RESULTS: Five study laboratories used VITEK(®)2 and one MicroScan (Walkaway Combo Panel). Out of 120 isolates, 118 isolates (98.3%) were confirmed as E. coli. The 99 E. coli isolates from five study laboratories that used VITEK(®)2 showed high proportions of EA and CA with full agreements for gentamicin, meropenem, imipenem and ertapenem. Additionally, 100% CA was also observed in cefepime. Few VME (0.5%), ME (1.9%) and mE (1.5%) were observed across all antibiotics. One VME for ceftazidime (7.1%) and 12 MEs for ampicillin (29.4%), cefotaxime (2.4%), ciprofloxacin (3.2%), tigecycline (1.5%) and trimethoprim (22.2%) were detected. CONCLUSIONS: MICs from E. coli isolates produced by VITEK(®)2 were similar to those determined by broth microdilution. These results will be valuable for comparative analyses of resistance data from human health surveillance and food safety monitoring systems. Oxford University Press 2021-09-21 /pmc/articles/PMC8524623/ /pubmed/34676365 http://dx.doi.org/10.1093/jacamr/dlab145 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Brief Report
Suwono, Beneditta
Hammerl, Jens André
Eckmanns, Tim
Merle, Roswitha
Eigner, Ulrich
Lümen, Michaela
Lauter, Sven
Stock, Rüdiger
Fenner, Ines
Boemke, Eva
Tenhagen, Bernd-Alois
Comparison of MICs in Escherichia coli isolates from human health surveillance with MICs obtained for the same isolates by broth microdilution
title Comparison of MICs in Escherichia coli isolates from human health surveillance with MICs obtained for the same isolates by broth microdilution
title_full Comparison of MICs in Escherichia coli isolates from human health surveillance with MICs obtained for the same isolates by broth microdilution
title_fullStr Comparison of MICs in Escherichia coli isolates from human health surveillance with MICs obtained for the same isolates by broth microdilution
title_full_unstemmed Comparison of MICs in Escherichia coli isolates from human health surveillance with MICs obtained for the same isolates by broth microdilution
title_short Comparison of MICs in Escherichia coli isolates from human health surveillance with MICs obtained for the same isolates by broth microdilution
title_sort comparison of mics in escherichia coli isolates from human health surveillance with mics obtained for the same isolates by broth microdilution
topic Brief Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8524623/
https://www.ncbi.nlm.nih.gov/pubmed/34676365
http://dx.doi.org/10.1093/jacamr/dlab145
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