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Identification of three immune molecular subtypes associated with immune profiles, immune checkpoints, and clinical outcome in multiple myeloma

PURPOSE: To identify the immune molecular subtype for MM to help achieve individualized and precise targeted therapy. METHODS: The GDC API was used to download the TCGA‐MM profile dataset, which contains 859 samples in total, all of which were anterior to the standard treatment after diagnosis. More...

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Autores principales: Gao, Guangtao, Fang, Mengkun, Xu, Peipei, Chen, Bing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8525096/
https://www.ncbi.nlm.nih.gov/pubmed/34418312
http://dx.doi.org/10.1002/cam4.4221
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author Gao, Guangtao
Fang, Mengkun
Xu, Peipei
Chen, Bing
author_facet Gao, Guangtao
Fang, Mengkun
Xu, Peipei
Chen, Bing
author_sort Gao, Guangtao
collection PubMed
description PURPOSE: To identify the immune molecular subtype for MM to help achieve individualized and precise targeted therapy. METHODS: The GDC API was used to download the TCGA‐MM profile dataset, which contains 859 samples in total, all of which were anterior to the standard treatment after diagnosis. Moreover, 282, 298, and 258 samples were stage I, stage II, and stage III separately. We used the immune gene expression profile for consistent clustering; and used the R software package ConsensusClusterPlus to sort the immune molecular subtypes. Correlation between subtypes and clinical features, immunity, and prognosis was then analyzed. RESULTS: A total of 859 tumor samples were separated into these three subtypes, which were not meaningfully related to age or sex but showed a remarkable association with stage. The results suggested that obvious differences in immune metagene expression and expression of 10 immune checkpoint genes appeared among the three subtypes. CONCLUSION: The three subtypes are distinctly different in terms of immune metagenes, immune checkpoint molecules, and clinical prognosis. The discovery of the immune microenvironment of MM could further reveal the strategy for immunotherapy in MM and provide a promising candidate prognostic tool for survival.
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spelling pubmed-85250962021-10-26 Identification of three immune molecular subtypes associated with immune profiles, immune checkpoints, and clinical outcome in multiple myeloma Gao, Guangtao Fang, Mengkun Xu, Peipei Chen, Bing Cancer Med Bioinformatics PURPOSE: To identify the immune molecular subtype for MM to help achieve individualized and precise targeted therapy. METHODS: The GDC API was used to download the TCGA‐MM profile dataset, which contains 859 samples in total, all of which were anterior to the standard treatment after diagnosis. Moreover, 282, 298, and 258 samples were stage I, stage II, and stage III separately. We used the immune gene expression profile for consistent clustering; and used the R software package ConsensusClusterPlus to sort the immune molecular subtypes. Correlation between subtypes and clinical features, immunity, and prognosis was then analyzed. RESULTS: A total of 859 tumor samples were separated into these three subtypes, which were not meaningfully related to age or sex but showed a remarkable association with stage. The results suggested that obvious differences in immune metagene expression and expression of 10 immune checkpoint genes appeared among the three subtypes. CONCLUSION: The three subtypes are distinctly different in terms of immune metagenes, immune checkpoint molecules, and clinical prognosis. The discovery of the immune microenvironment of MM could further reveal the strategy for immunotherapy in MM and provide a promising candidate prognostic tool for survival. John Wiley and Sons Inc. 2021-08-21 /pmc/articles/PMC8525096/ /pubmed/34418312 http://dx.doi.org/10.1002/cam4.4221 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Bioinformatics
Gao, Guangtao
Fang, Mengkun
Xu, Peipei
Chen, Bing
Identification of three immune molecular subtypes associated with immune profiles, immune checkpoints, and clinical outcome in multiple myeloma
title Identification of three immune molecular subtypes associated with immune profiles, immune checkpoints, and clinical outcome in multiple myeloma
title_full Identification of three immune molecular subtypes associated with immune profiles, immune checkpoints, and clinical outcome in multiple myeloma
title_fullStr Identification of three immune molecular subtypes associated with immune profiles, immune checkpoints, and clinical outcome in multiple myeloma
title_full_unstemmed Identification of three immune molecular subtypes associated with immune profiles, immune checkpoints, and clinical outcome in multiple myeloma
title_short Identification of three immune molecular subtypes associated with immune profiles, immune checkpoints, and clinical outcome in multiple myeloma
title_sort identification of three immune molecular subtypes associated with immune profiles, immune checkpoints, and clinical outcome in multiple myeloma
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8525096/
https://www.ncbi.nlm.nih.gov/pubmed/34418312
http://dx.doi.org/10.1002/cam4.4221
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