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Rapid estimation of photosynthetic leaf traits of tropical plants in diverse environmental conditions using reflectance spectroscopy
Tropical forests are one of the main carbon sinks on Earth, but the magnitude of CO(2) absorbed by tropical vegetation remains uncertain. Terrestrial biosphere models (TBMs) are commonly used to estimate the CO(2) absorbed by forests, but their performance is highly sensitive to the parameterization...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8525780/ https://www.ncbi.nlm.nih.gov/pubmed/34665822 http://dx.doi.org/10.1371/journal.pone.0258791 |
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author | Lamour, Julien Davidson, Kenneth J. Ely, Kim S. Anderson, Jeremiah A. Rogers, Alistair Wu, Jin Serbin, Shawn P. |
author_facet | Lamour, Julien Davidson, Kenneth J. Ely, Kim S. Anderson, Jeremiah A. Rogers, Alistair Wu, Jin Serbin, Shawn P. |
author_sort | Lamour, Julien |
collection | PubMed |
description | Tropical forests are one of the main carbon sinks on Earth, but the magnitude of CO(2) absorbed by tropical vegetation remains uncertain. Terrestrial biosphere models (TBMs) are commonly used to estimate the CO(2) absorbed by forests, but their performance is highly sensitive to the parameterization of processes that control leaf-level CO(2) exchange. Direct measurements of leaf respiratory and photosynthetic traits that determine vegetation CO(2) fluxes are critical, but traditional approaches are time-consuming. Reflectance spectroscopy can be a viable alternative for the estimation of these traits and, because data collection is markedly quicker than traditional gas exchange, the approach can enable the rapid assembly of large datasets. However, the application of spectroscopy to estimate photosynthetic traits across a wide range of tropical species, leaf ages and light environments has not been extensively studied. Here, we used leaf reflectance spectroscopy together with partial least-squares regression (PLSR) modeling to estimate leaf respiration (R(dark25)), the maximum rate of carboxylation by the enzyme Rubisco (V(cmax25)), the maximum rate of electron transport (J(max25)), and the triose phosphate utilization rate (T(p25)), all normalized to 25°C. We collected data from three tropical forest sites and included leaves from fifty-three species sampled at different leaf phenological stages and different leaf light environments. Our resulting spectra-trait models validated on randomly sampled data showed good predictive performance for V(cmax25), J(max25), T(p25) and R(dark25) (RMSE of 13, 20, 1.5 and 0.3 μmol m(-2) s(-1), and R(2) of 0.74, 0.73, 0.64 and 0.58, respectively). The models showed similar performance when applied to leaves of species not included in the training dataset, illustrating that the approach is robust for capturing the main axes of trait variation in tropical species. We discuss the utility of the spectra-trait and traditional gas exchange approaches for enhancing tropical plant trait studies and improving the parameterization of TBMs. |
format | Online Article Text |
id | pubmed-8525780 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-85257802021-10-20 Rapid estimation of photosynthetic leaf traits of tropical plants in diverse environmental conditions using reflectance spectroscopy Lamour, Julien Davidson, Kenneth J. Ely, Kim S. Anderson, Jeremiah A. Rogers, Alistair Wu, Jin Serbin, Shawn P. PLoS One Research Article Tropical forests are one of the main carbon sinks on Earth, but the magnitude of CO(2) absorbed by tropical vegetation remains uncertain. Terrestrial biosphere models (TBMs) are commonly used to estimate the CO(2) absorbed by forests, but their performance is highly sensitive to the parameterization of processes that control leaf-level CO(2) exchange. Direct measurements of leaf respiratory and photosynthetic traits that determine vegetation CO(2) fluxes are critical, but traditional approaches are time-consuming. Reflectance spectroscopy can be a viable alternative for the estimation of these traits and, because data collection is markedly quicker than traditional gas exchange, the approach can enable the rapid assembly of large datasets. However, the application of spectroscopy to estimate photosynthetic traits across a wide range of tropical species, leaf ages and light environments has not been extensively studied. Here, we used leaf reflectance spectroscopy together with partial least-squares regression (PLSR) modeling to estimate leaf respiration (R(dark25)), the maximum rate of carboxylation by the enzyme Rubisco (V(cmax25)), the maximum rate of electron transport (J(max25)), and the triose phosphate utilization rate (T(p25)), all normalized to 25°C. We collected data from three tropical forest sites and included leaves from fifty-three species sampled at different leaf phenological stages and different leaf light environments. Our resulting spectra-trait models validated on randomly sampled data showed good predictive performance for V(cmax25), J(max25), T(p25) and R(dark25) (RMSE of 13, 20, 1.5 and 0.3 μmol m(-2) s(-1), and R(2) of 0.74, 0.73, 0.64 and 0.58, respectively). The models showed similar performance when applied to leaves of species not included in the training dataset, illustrating that the approach is robust for capturing the main axes of trait variation in tropical species. We discuss the utility of the spectra-trait and traditional gas exchange approaches for enhancing tropical plant trait studies and improving the parameterization of TBMs. Public Library of Science 2021-10-19 /pmc/articles/PMC8525780/ /pubmed/34665822 http://dx.doi.org/10.1371/journal.pone.0258791 Text en © 2021 Lamour et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Lamour, Julien Davidson, Kenneth J. Ely, Kim S. Anderson, Jeremiah A. Rogers, Alistair Wu, Jin Serbin, Shawn P. Rapid estimation of photosynthetic leaf traits of tropical plants in diverse environmental conditions using reflectance spectroscopy |
title | Rapid estimation of photosynthetic leaf traits of tropical plants in diverse environmental conditions using reflectance spectroscopy |
title_full | Rapid estimation of photosynthetic leaf traits of tropical plants in diverse environmental conditions using reflectance spectroscopy |
title_fullStr | Rapid estimation of photosynthetic leaf traits of tropical plants in diverse environmental conditions using reflectance spectroscopy |
title_full_unstemmed | Rapid estimation of photosynthetic leaf traits of tropical plants in diverse environmental conditions using reflectance spectroscopy |
title_short | Rapid estimation of photosynthetic leaf traits of tropical plants in diverse environmental conditions using reflectance spectroscopy |
title_sort | rapid estimation of photosynthetic leaf traits of tropical plants in diverse environmental conditions using reflectance spectroscopy |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8525780/ https://www.ncbi.nlm.nih.gov/pubmed/34665822 http://dx.doi.org/10.1371/journal.pone.0258791 |
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