The complete chloroplast genome of Dendrobium comatum (Orchidaceae)

Dendrobium comatum is a rare orchid plant. To further its research and conservation, we reported and characterized its complete chloroplast (cp) genome by using Illumina paired-end sequencing data. We also analyzed its characteristics and studied its clustering relationships. The total chloroplast g...

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Detalles Bibliográficos
Autores principales: Liu, Feng, Xiao, Xu, An, Mingtai, Li, Zhi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8525993/
https://www.ncbi.nlm.nih.gov/pubmed/34676297
http://dx.doi.org/10.1080/23802359.2021.1990152
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author Liu, Feng
Xiao, Xu
An, Mingtai
Li, Zhi
author_facet Liu, Feng
Xiao, Xu
An, Mingtai
Li, Zhi
author_sort Liu, Feng
collection PubMed
description Dendrobium comatum is a rare orchid plant. To further its research and conservation, we reported and characterized its complete chloroplast (cp) genome by using Illumina paired-end sequencing data. We also analyzed its characteristics and studied its clustering relationships. The total chloroplast genome size was 158,008 bp, including inverted repeats (IRs) of 27,032 bp separated by a large single copy (LSC) region and a small single copy (SSC) region of 85,592 and 18,352 bp, respectively. A total of 132 genes, including 38 tRNA, 8 rRNA, and 87 protein-coding genes, were identified. Phylogenetic analysis showed that D. comatum is sister to D. kingianum with sufficient support.
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spelling pubmed-85259932021-10-20 The complete chloroplast genome of Dendrobium comatum (Orchidaceae) Liu, Feng Xiao, Xu An, Mingtai Li, Zhi Mitochondrial DNA B Resour Mitogenome Announcement Dendrobium comatum is a rare orchid plant. To further its research and conservation, we reported and characterized its complete chloroplast (cp) genome by using Illumina paired-end sequencing data. We also analyzed its characteristics and studied its clustering relationships. The total chloroplast genome size was 158,008 bp, including inverted repeats (IRs) of 27,032 bp separated by a large single copy (LSC) region and a small single copy (SSC) region of 85,592 and 18,352 bp, respectively. A total of 132 genes, including 38 tRNA, 8 rRNA, and 87 protein-coding genes, were identified. Phylogenetic analysis showed that D. comatum is sister to D. kingianum with sufficient support. Taylor & Francis 2021-10-15 /pmc/articles/PMC8525993/ /pubmed/34676297 http://dx.doi.org/10.1080/23802359.2021.1990152 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Liu, Feng
Xiao, Xu
An, Mingtai
Li, Zhi
The complete chloroplast genome of Dendrobium comatum (Orchidaceae)
title The complete chloroplast genome of Dendrobium comatum (Orchidaceae)
title_full The complete chloroplast genome of Dendrobium comatum (Orchidaceae)
title_fullStr The complete chloroplast genome of Dendrobium comatum (Orchidaceae)
title_full_unstemmed The complete chloroplast genome of Dendrobium comatum (Orchidaceae)
title_short The complete chloroplast genome of Dendrobium comatum (Orchidaceae)
title_sort complete chloroplast genome of dendrobium comatum (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8525993/
https://www.ncbi.nlm.nih.gov/pubmed/34676297
http://dx.doi.org/10.1080/23802359.2021.1990152
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