Cargando…
A Potential Three-Gene-Based Diagnostic Signature for Hypertension in Pregnancy
BACKGROUND: Hypertensive disorders of pregnancy affect approximately 5–10% of all pregnancies, and this study aims to identify potential diagnostic signatures. METHODS: We downloaded the mRNA profiles of GSE75010 (placenta samples) and GSE48424 (blood samples) datasets with or without hypertension i...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Dove
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8526516/ https://www.ncbi.nlm.nih.gov/pubmed/34703289 http://dx.doi.org/10.2147/IJGM.S331573 |
_version_ | 1784585884921757696 |
---|---|
author | Liu, Yan Wang, Zhenglu Zhao, Lin |
author_facet | Liu, Yan Wang, Zhenglu Zhao, Lin |
author_sort | Liu, Yan |
collection | PubMed |
description | BACKGROUND: Hypertensive disorders of pregnancy affect approximately 5–10% of all pregnancies, and this study aims to identify potential diagnostic signatures. METHODS: We downloaded the mRNA profiles of GSE75010 (placenta samples) and GSE48424 (blood samples) datasets with or without hypertension in pregnancy from the Gene Expression Omnibus database. Differential expression analysis was performed on the placenta samples using limma package of R language. GO terms and KEGG pathways enrichment analyses were performed on the placenta samples by the clusterProfiler package of R language. Infiltrating immune cell proportion of the placenta samples was evaluated using CIBERSORT software. The key genes involved in hypertension in pregnancy were screened from protein–protein interaction (PPI) network constructed based on the differentially expressed genes (DEGs). The logistic regression model was constructed by the glm package of R language, and receiver operating characteristic (ROC) curve was plotted to determine the accuracy of the model. RESULTS: For the placenta samples, a total of 104 DEGs were identified, and 39 GO terms and 7 KEGG pathways were significantly enriched based on these 104 genes. Furthermore, the analysis of infiltrating immune cells indicated that the difference in the amount of immune cells might be the potential cause of hypertension in pregnancy. The logistic regression model was constructed based on three optimal genes (LEP, PRL and IGFBP1) screened from PPI network and could efficiently separate patients with hypertension in pregnancy from healthy subjects. CONCLUSION: A predictive model based on three potential genes LEP, PRL and IGFBP1 was obtained, suggesting that these genes might be potential diagnostic signatures for hypertension in pregnancy. |
format | Online Article Text |
id | pubmed-8526516 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Dove |
record_format | MEDLINE/PubMed |
spelling | pubmed-85265162021-10-25 A Potential Three-Gene-Based Diagnostic Signature for Hypertension in Pregnancy Liu, Yan Wang, Zhenglu Zhao, Lin Int J Gen Med Original Research BACKGROUND: Hypertensive disorders of pregnancy affect approximately 5–10% of all pregnancies, and this study aims to identify potential diagnostic signatures. METHODS: We downloaded the mRNA profiles of GSE75010 (placenta samples) and GSE48424 (blood samples) datasets with or without hypertension in pregnancy from the Gene Expression Omnibus database. Differential expression analysis was performed on the placenta samples using limma package of R language. GO terms and KEGG pathways enrichment analyses were performed on the placenta samples by the clusterProfiler package of R language. Infiltrating immune cell proportion of the placenta samples was evaluated using CIBERSORT software. The key genes involved in hypertension in pregnancy were screened from protein–protein interaction (PPI) network constructed based on the differentially expressed genes (DEGs). The logistic regression model was constructed by the glm package of R language, and receiver operating characteristic (ROC) curve was plotted to determine the accuracy of the model. RESULTS: For the placenta samples, a total of 104 DEGs were identified, and 39 GO terms and 7 KEGG pathways were significantly enriched based on these 104 genes. Furthermore, the analysis of infiltrating immune cells indicated that the difference in the amount of immune cells might be the potential cause of hypertension in pregnancy. The logistic regression model was constructed based on three optimal genes (LEP, PRL and IGFBP1) screened from PPI network and could efficiently separate patients with hypertension in pregnancy from healthy subjects. CONCLUSION: A predictive model based on three potential genes LEP, PRL and IGFBP1 was obtained, suggesting that these genes might be potential diagnostic signatures for hypertension in pregnancy. Dove 2021-10-15 /pmc/articles/PMC8526516/ /pubmed/34703289 http://dx.doi.org/10.2147/IJGM.S331573 Text en © 2021 Liu et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php). |
spellingShingle | Original Research Liu, Yan Wang, Zhenglu Zhao, Lin A Potential Three-Gene-Based Diagnostic Signature for Hypertension in Pregnancy |
title | A Potential Three-Gene-Based Diagnostic Signature for Hypertension in Pregnancy |
title_full | A Potential Three-Gene-Based Diagnostic Signature for Hypertension in Pregnancy |
title_fullStr | A Potential Three-Gene-Based Diagnostic Signature for Hypertension in Pregnancy |
title_full_unstemmed | A Potential Three-Gene-Based Diagnostic Signature for Hypertension in Pregnancy |
title_short | A Potential Three-Gene-Based Diagnostic Signature for Hypertension in Pregnancy |
title_sort | potential three-gene-based diagnostic signature for hypertension in pregnancy |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8526516/ https://www.ncbi.nlm.nih.gov/pubmed/34703289 http://dx.doi.org/10.2147/IJGM.S331573 |
work_keys_str_mv | AT liuyan apotentialthreegenebaseddiagnosticsignatureforhypertensioninpregnancy AT wangzhenglu apotentialthreegenebaseddiagnosticsignatureforhypertensioninpregnancy AT zhaolin apotentialthreegenebaseddiagnosticsignatureforhypertensioninpregnancy AT liuyan potentialthreegenebaseddiagnosticsignatureforhypertensioninpregnancy AT wangzhenglu potentialthreegenebaseddiagnosticsignatureforhypertensioninpregnancy AT zhaolin potentialthreegenebaseddiagnosticsignatureforhypertensioninpregnancy |