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Type III CRISPR-Cas Systems: Deciphering the Most Complex Prokaryotic Immune System

The emergence and persistence of selfish genetic elements is an intrinsic feature of all living systems. Cellular organisms have evolved a plethora of elaborate defense systems that limit the spread of such genetic parasites. CRISPR-Cas are RNA-guided defense systems used by prokaryotes to recognize...

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Autores principales: Kolesnik, Matvey V., Fedorova, Iana, Karneyeva, Karyna A., Artamonova, Daria N., Severinov, Konstantin V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pleiades Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8527444/
https://www.ncbi.nlm.nih.gov/pubmed/34903162
http://dx.doi.org/10.1134/S0006297921100114
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author Kolesnik, Matvey V.
Fedorova, Iana
Karneyeva, Karyna A.
Artamonova, Daria N.
Severinov, Konstantin V.
author_facet Kolesnik, Matvey V.
Fedorova, Iana
Karneyeva, Karyna A.
Artamonova, Daria N.
Severinov, Konstantin V.
author_sort Kolesnik, Matvey V.
collection PubMed
description The emergence and persistence of selfish genetic elements is an intrinsic feature of all living systems. Cellular organisms have evolved a plethora of elaborate defense systems that limit the spread of such genetic parasites. CRISPR-Cas are RNA-guided defense systems used by prokaryotes to recognize and destroy foreign nucleic acids. These systems acquire and store fragments of foreign nucleic acids and utilize the stored sequences as guides to recognize and destroy genetic invaders. CRISPR-Cas systems have been extensively studied, as some of them are used in various genome editing technologies. Although Type III CRISPR-Cas systems are among the most common CRISPR-Cas systems, they are also some of the least investigated ones, mostly due to the complexity of their action compared to other CRISPR-Cas system types. Type III effector complexes specifically recognize and cleave RNA molecules. The recognition of the target RNA activates the effector large subunit – the so-called CRISPR polymerase – which cleaves DNA and produces small cyclic oligonucleotides that act as signaling molecules to activate auxiliary effectors, notably non-specific RNases. In this review, we provide a historical overview of the sometimes meandering pathway of the Type III CRISPR research. We also review the current data on the structures and activities of Type III CRISPR-Cas systems components, their biological roles, and evolutionary history. Finally, using structural modeling with AlphaFold2, we show that the archaeal HRAMP signature protein, which heretofore has had no assigned function, is a degenerate relative of Type III CRISPR-Cas signature protein Cas10, suggesting that HRAMP systems have descended from Type III CRISPR-Cas systems or their ancestors.
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spelling pubmed-85274442021-10-20 Type III CRISPR-Cas Systems: Deciphering the Most Complex Prokaryotic Immune System Kolesnik, Matvey V. Fedorova, Iana Karneyeva, Karyna A. Artamonova, Daria N. Severinov, Konstantin V. Biochemistry (Mosc) Review The emergence and persistence of selfish genetic elements is an intrinsic feature of all living systems. Cellular organisms have evolved a plethora of elaborate defense systems that limit the spread of such genetic parasites. CRISPR-Cas are RNA-guided defense systems used by prokaryotes to recognize and destroy foreign nucleic acids. These systems acquire and store fragments of foreign nucleic acids and utilize the stored sequences as guides to recognize and destroy genetic invaders. CRISPR-Cas systems have been extensively studied, as some of them are used in various genome editing technologies. Although Type III CRISPR-Cas systems are among the most common CRISPR-Cas systems, they are also some of the least investigated ones, mostly due to the complexity of their action compared to other CRISPR-Cas system types. Type III effector complexes specifically recognize and cleave RNA molecules. The recognition of the target RNA activates the effector large subunit – the so-called CRISPR polymerase – which cleaves DNA and produces small cyclic oligonucleotides that act as signaling molecules to activate auxiliary effectors, notably non-specific RNases. In this review, we provide a historical overview of the sometimes meandering pathway of the Type III CRISPR research. We also review the current data on the structures and activities of Type III CRISPR-Cas systems components, their biological roles, and evolutionary history. Finally, using structural modeling with AlphaFold2, we show that the archaeal HRAMP signature protein, which heretofore has had no assigned function, is a degenerate relative of Type III CRISPR-Cas signature protein Cas10, suggesting that HRAMP systems have descended from Type III CRISPR-Cas systems or their ancestors. Pleiades Publishing 2021-10-20 2021 /pmc/articles/PMC8527444/ /pubmed/34903162 http://dx.doi.org/10.1134/S0006297921100114 Text en © Pleiades Publishing, Ltd. 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Review
Kolesnik, Matvey V.
Fedorova, Iana
Karneyeva, Karyna A.
Artamonova, Daria N.
Severinov, Konstantin V.
Type III CRISPR-Cas Systems: Deciphering the Most Complex Prokaryotic Immune System
title Type III CRISPR-Cas Systems: Deciphering the Most Complex Prokaryotic Immune System
title_full Type III CRISPR-Cas Systems: Deciphering the Most Complex Prokaryotic Immune System
title_fullStr Type III CRISPR-Cas Systems: Deciphering the Most Complex Prokaryotic Immune System
title_full_unstemmed Type III CRISPR-Cas Systems: Deciphering the Most Complex Prokaryotic Immune System
title_short Type III CRISPR-Cas Systems: Deciphering the Most Complex Prokaryotic Immune System
title_sort type iii crispr-cas systems: deciphering the most complex prokaryotic immune system
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8527444/
https://www.ncbi.nlm.nih.gov/pubmed/34903162
http://dx.doi.org/10.1134/S0006297921100114
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