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Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae
Species of Phytophthora, plant pathogenic eukaryotic microbes, can cause disease on many tree species. Genome sequencing of species from this genus has helped to determine components of their pathogenicity arsenal. Here, we sequenced genomes for two widely distributed species, Phytophthora pseudosyr...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8527500/ https://www.ncbi.nlm.nih.gov/pubmed/34849788 http://dx.doi.org/10.1093/g3journal/jkab282 |
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author | Thorpe, Peter Vetukuri, Ramesh R Hedley, Pete E Morris, Jenny Whisson, Maximilian A Welsh, Lydia R J Whisson, Stephen C |
author_facet | Thorpe, Peter Vetukuri, Ramesh R Hedley, Pete E Morris, Jenny Whisson, Maximilian A Welsh, Lydia R J Whisson, Stephen C |
author_sort | Thorpe, Peter |
collection | PubMed |
description | Species of Phytophthora, plant pathogenic eukaryotic microbes, can cause disease on many tree species. Genome sequencing of species from this genus has helped to determine components of their pathogenicity arsenal. Here, we sequenced genomes for two widely distributed species, Phytophthora pseudosyringae and Phytophthora boehmeriae, yielding genome assemblies of 49 and 40 Mb, respectively. We identified more than 270 candidate disease promoting RXLR effector coding genes for each species, and hundreds of genes encoding candidate plant cell wall degrading carbohydrate active enzymes (CAZymes). These data boost genome sequence representation across the Phytophthora genus, and form resources for further study of Phytophthora pathogenesis. |
format | Online Article Text |
id | pubmed-8527500 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-85275002021-10-20 Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae Thorpe, Peter Vetukuri, Ramesh R Hedley, Pete E Morris, Jenny Whisson, Maximilian A Welsh, Lydia R J Whisson, Stephen C G3 (Bethesda) Genome Report Species of Phytophthora, plant pathogenic eukaryotic microbes, can cause disease on many tree species. Genome sequencing of species from this genus has helped to determine components of their pathogenicity arsenal. Here, we sequenced genomes for two widely distributed species, Phytophthora pseudosyringae and Phytophthora boehmeriae, yielding genome assemblies of 49 and 40 Mb, respectively. We identified more than 270 candidate disease promoting RXLR effector coding genes for each species, and hundreds of genes encoding candidate plant cell wall degrading carbohydrate active enzymes (CAZymes). These data boost genome sequence representation across the Phytophthora genus, and form resources for further study of Phytophthora pathogenesis. Oxford University Press 2021-08-13 /pmc/articles/PMC8527500/ /pubmed/34849788 http://dx.doi.org/10.1093/g3journal/jkab282 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Report Thorpe, Peter Vetukuri, Ramesh R Hedley, Pete E Morris, Jenny Whisson, Maximilian A Welsh, Lydia R J Whisson, Stephen C Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae |
title | Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae |
title_full | Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae |
title_fullStr | Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae |
title_full_unstemmed | Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae |
title_short | Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae |
title_sort | draft genome assemblies for tree pathogens phytophthora pseudosyringae and phytophthora boehmeriae |
topic | Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8527500/ https://www.ncbi.nlm.nih.gov/pubmed/34849788 http://dx.doi.org/10.1093/g3journal/jkab282 |
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