Cargando…

Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae

Species of Phytophthora, plant pathogenic eukaryotic microbes, can cause disease on many tree species. Genome sequencing of species from this genus has helped to determine components of their pathogenicity arsenal. Here, we sequenced genomes for two widely distributed species, Phytophthora pseudosyr...

Descripción completa

Detalles Bibliográficos
Autores principales: Thorpe, Peter, Vetukuri, Ramesh R, Hedley, Pete E, Morris, Jenny, Whisson, Maximilian A, Welsh, Lydia R J, Whisson, Stephen C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8527500/
https://www.ncbi.nlm.nih.gov/pubmed/34849788
http://dx.doi.org/10.1093/g3journal/jkab282
_version_ 1784586081115570176
author Thorpe, Peter
Vetukuri, Ramesh R
Hedley, Pete E
Morris, Jenny
Whisson, Maximilian A
Welsh, Lydia R J
Whisson, Stephen C
author_facet Thorpe, Peter
Vetukuri, Ramesh R
Hedley, Pete E
Morris, Jenny
Whisson, Maximilian A
Welsh, Lydia R J
Whisson, Stephen C
author_sort Thorpe, Peter
collection PubMed
description Species of Phytophthora, plant pathogenic eukaryotic microbes, can cause disease on many tree species. Genome sequencing of species from this genus has helped to determine components of their pathogenicity arsenal. Here, we sequenced genomes for two widely distributed species, Phytophthora pseudosyringae and Phytophthora boehmeriae, yielding genome assemblies of 49 and 40 Mb, respectively. We identified more than 270 candidate disease promoting RXLR effector coding genes for each species, and hundreds of genes encoding candidate plant cell wall degrading carbohydrate active enzymes (CAZymes). These data boost genome sequence representation across the Phytophthora genus, and form resources for further study of Phytophthora pathogenesis.
format Online
Article
Text
id pubmed-8527500
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-85275002021-10-20 Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae Thorpe, Peter Vetukuri, Ramesh R Hedley, Pete E Morris, Jenny Whisson, Maximilian A Welsh, Lydia R J Whisson, Stephen C G3 (Bethesda) Genome Report Species of Phytophthora, plant pathogenic eukaryotic microbes, can cause disease on many tree species. Genome sequencing of species from this genus has helped to determine components of their pathogenicity arsenal. Here, we sequenced genomes for two widely distributed species, Phytophthora pseudosyringae and Phytophthora boehmeriae, yielding genome assemblies of 49 and 40 Mb, respectively. We identified more than 270 candidate disease promoting RXLR effector coding genes for each species, and hundreds of genes encoding candidate plant cell wall degrading carbohydrate active enzymes (CAZymes). These data boost genome sequence representation across the Phytophthora genus, and form resources for further study of Phytophthora pathogenesis. Oxford University Press 2021-08-13 /pmc/articles/PMC8527500/ /pubmed/34849788 http://dx.doi.org/10.1093/g3journal/jkab282 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Report
Thorpe, Peter
Vetukuri, Ramesh R
Hedley, Pete E
Morris, Jenny
Whisson, Maximilian A
Welsh, Lydia R J
Whisson, Stephen C
Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae
title Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae
title_full Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae
title_fullStr Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae
title_full_unstemmed Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae
title_short Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae
title_sort draft genome assemblies for tree pathogens phytophthora pseudosyringae and phytophthora boehmeriae
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8527500/
https://www.ncbi.nlm.nih.gov/pubmed/34849788
http://dx.doi.org/10.1093/g3journal/jkab282
work_keys_str_mv AT thorpepeter draftgenomeassembliesfortreepathogensphytophthorapseudosyringaeandphytophthoraboehmeriae
AT vetukurirameshr draftgenomeassembliesfortreepathogensphytophthorapseudosyringaeandphytophthoraboehmeriae
AT hedleypetee draftgenomeassembliesfortreepathogensphytophthorapseudosyringaeandphytophthoraboehmeriae
AT morrisjenny draftgenomeassembliesfortreepathogensphytophthorapseudosyringaeandphytophthoraboehmeriae
AT whissonmaximiliana draftgenomeassembliesfortreepathogensphytophthorapseudosyringaeandphytophthoraboehmeriae
AT welshlydiarj draftgenomeassembliesfortreepathogensphytophthorapseudosyringaeandphytophthoraboehmeriae
AT whissonstephenc draftgenomeassembliesfortreepathogensphytophthorapseudosyringaeandphytophthoraboehmeriae