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Sustainable computational science: the ReScience initiative
Computer science offers a large set of tools for prototyping, writing, running, testing, validating, sharing and reproducing results; however, computational science lags behind. In the best case, authors may provide their source code as a compressed archive and they may feel confident their research...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8530091/ https://www.ncbi.nlm.nih.gov/pubmed/34722870 http://dx.doi.org/10.7717/peerj-cs.142 |
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author | Rougier, Nicolas P. Hinsen, Konrad Alexandre, Frédéric Arildsen, Thomas Barba, Lorena A. Benureau, Fabien C.Y. Brown, C. Titus de Buyl, Pierre Caglayan, Ozan Davison, Andrew P. Delsuc, Marc-André Detorakis, Georgios Diem, Alexandra K. Drix, Damien Enel, Pierre Girard, Benoît Guest, Olivia Hall, Matt G. Henriques, Rafael N. Hinaut, Xavier Jaron, Kamil S. Khamassi, Mehdi Klein, Almar Manninen, Tiina Marchesi, Pietro McGlinn, Daniel Metzner, Christoph Petchey, Owen Plesser, Hans Ekkehard Poisot, Timothée Ram, Karthik Ram, Yoav Roesch, Etienne Rossant, Cyrille Rostami, Vahid Shifman, Aaron Stachelek, Jemma Stimberg, Marcel Stollmeier, Frank Vaggi, Federico Viejo, Guillaume Vitay, Julien Vostinar, Anya E. Yurchak, Roman Zito, Tiziano |
author_facet | Rougier, Nicolas P. Hinsen, Konrad Alexandre, Frédéric Arildsen, Thomas Barba, Lorena A. Benureau, Fabien C.Y. Brown, C. Titus de Buyl, Pierre Caglayan, Ozan Davison, Andrew P. Delsuc, Marc-André Detorakis, Georgios Diem, Alexandra K. Drix, Damien Enel, Pierre Girard, Benoît Guest, Olivia Hall, Matt G. Henriques, Rafael N. Hinaut, Xavier Jaron, Kamil S. Khamassi, Mehdi Klein, Almar Manninen, Tiina Marchesi, Pietro McGlinn, Daniel Metzner, Christoph Petchey, Owen Plesser, Hans Ekkehard Poisot, Timothée Ram, Karthik Ram, Yoav Roesch, Etienne Rossant, Cyrille Rostami, Vahid Shifman, Aaron Stachelek, Jemma Stimberg, Marcel Stollmeier, Frank Vaggi, Federico Viejo, Guillaume Vitay, Julien Vostinar, Anya E. Yurchak, Roman Zito, Tiziano |
author_sort | Rougier, Nicolas P. |
collection | PubMed |
description | Computer science offers a large set of tools for prototyping, writing, running, testing, validating, sharing and reproducing results; however, computational science lags behind. In the best case, authors may provide their source code as a compressed archive and they may feel confident their research is reproducible. But this is not exactly true. James Buckheit and David Donoho proposed more than two decades ago that an article about computational results is advertising, not scholarship. The actual scholarship is the full software environment, code, and data that produced the result. This implies new workflows, in particular in peer-reviews. Existing journals have been slow to adapt: source codes are rarely requested and are hardly ever actually executed to check that they produce the results advertised in the article. ReScience is a peer-reviewed journal that targets computational research and encourages the explicit replication of already published research, promoting new and open-source implementations in order to ensure that the original research can be replicated from its description. To achieve this goal, the whole publishing chain is radically different from other traditional scientific journals. ReScience resides on GitHub where each new implementation of a computational study is made available together with comments, explanations, and software tests. |
format | Online Article Text |
id | pubmed-8530091 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-85300912021-10-29 Sustainable computational science: the ReScience initiative Rougier, Nicolas P. Hinsen, Konrad Alexandre, Frédéric Arildsen, Thomas Barba, Lorena A. Benureau, Fabien C.Y. Brown, C. Titus de Buyl, Pierre Caglayan, Ozan Davison, Andrew P. Delsuc, Marc-André Detorakis, Georgios Diem, Alexandra K. Drix, Damien Enel, Pierre Girard, Benoît Guest, Olivia Hall, Matt G. Henriques, Rafael N. Hinaut, Xavier Jaron, Kamil S. Khamassi, Mehdi Klein, Almar Manninen, Tiina Marchesi, Pietro McGlinn, Daniel Metzner, Christoph Petchey, Owen Plesser, Hans Ekkehard Poisot, Timothée Ram, Karthik Ram, Yoav Roesch, Etienne Rossant, Cyrille Rostami, Vahid Shifman, Aaron Stachelek, Jemma Stimberg, Marcel Stollmeier, Frank Vaggi, Federico Viejo, Guillaume Vitay, Julien Vostinar, Anya E. Yurchak, Roman Zito, Tiziano PeerJ Comput Sci Data Science Computer science offers a large set of tools for prototyping, writing, running, testing, validating, sharing and reproducing results; however, computational science lags behind. In the best case, authors may provide their source code as a compressed archive and they may feel confident their research is reproducible. But this is not exactly true. James Buckheit and David Donoho proposed more than two decades ago that an article about computational results is advertising, not scholarship. The actual scholarship is the full software environment, code, and data that produced the result. This implies new workflows, in particular in peer-reviews. Existing journals have been slow to adapt: source codes are rarely requested and are hardly ever actually executed to check that they produce the results advertised in the article. ReScience is a peer-reviewed journal that targets computational research and encourages the explicit replication of already published research, promoting new and open-source implementations in order to ensure that the original research can be replicated from its description. To achieve this goal, the whole publishing chain is radically different from other traditional scientific journals. ReScience resides on GitHub where each new implementation of a computational study is made available together with comments, explanations, and software tests. PeerJ Inc. 2017-12-18 /pmc/articles/PMC8530091/ /pubmed/34722870 http://dx.doi.org/10.7717/peerj-cs.142 Text en ©2017 Rougier et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. |
spellingShingle | Data Science Rougier, Nicolas P. Hinsen, Konrad Alexandre, Frédéric Arildsen, Thomas Barba, Lorena A. Benureau, Fabien C.Y. Brown, C. Titus de Buyl, Pierre Caglayan, Ozan Davison, Andrew P. Delsuc, Marc-André Detorakis, Georgios Diem, Alexandra K. Drix, Damien Enel, Pierre Girard, Benoît Guest, Olivia Hall, Matt G. Henriques, Rafael N. Hinaut, Xavier Jaron, Kamil S. Khamassi, Mehdi Klein, Almar Manninen, Tiina Marchesi, Pietro McGlinn, Daniel Metzner, Christoph Petchey, Owen Plesser, Hans Ekkehard Poisot, Timothée Ram, Karthik Ram, Yoav Roesch, Etienne Rossant, Cyrille Rostami, Vahid Shifman, Aaron Stachelek, Jemma Stimberg, Marcel Stollmeier, Frank Vaggi, Federico Viejo, Guillaume Vitay, Julien Vostinar, Anya E. Yurchak, Roman Zito, Tiziano Sustainable computational science: the ReScience initiative |
title | Sustainable computational science: the ReScience initiative |
title_full | Sustainable computational science: the ReScience initiative |
title_fullStr | Sustainable computational science: the ReScience initiative |
title_full_unstemmed | Sustainable computational science: the ReScience initiative |
title_short | Sustainable computational science: the ReScience initiative |
title_sort | sustainable computational science: the rescience initiative |
topic | Data Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8530091/ https://www.ncbi.nlm.nih.gov/pubmed/34722870 http://dx.doi.org/10.7717/peerj-cs.142 |
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