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Characterization of the complete chloroplast genome of Actinidia hemsleyana

The completed chloroplast genome sequence of Actinidia hemsleyana, collected from eastern China, was firstly determined using next-generation sequencing (NGS) and bioinformatic analysis. The length of cp genome was 156,845 bp, including a large single-copy (LSC) region of 88,666 bp and a small singl...

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Autores principales: Xiaoqiong, Qi, Xiaodong, Xie, Mingjuan, Yang, Atak, Arif, Caihong, Zhong, Dawei, Li
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8530474/
https://www.ncbi.nlm.nih.gov/pubmed/34693017
http://dx.doi.org/10.1080/23802359.2021.1993100
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author Xiaoqiong, Qi
Xiaodong, Xie
Mingjuan, Yang
Atak, Arif
Caihong, Zhong
Dawei, Li
author_facet Xiaoqiong, Qi
Xiaodong, Xie
Mingjuan, Yang
Atak, Arif
Caihong, Zhong
Dawei, Li
author_sort Xiaoqiong, Qi
collection PubMed
description The completed chloroplast genome sequence of Actinidia hemsleyana, collected from eastern China, was firstly determined using next-generation sequencing (NGS) and bioinformatic analysis. The length of cp genome was 156,845 bp, including a large single-copy (LSC) region of 88,666 bp and a small single-copy (SSC) region of 20,543 bp, which were separated by a pair of inverted repeats (IRs) of 23,818 bp. The cp genome contained 132 genes, including 83 protein-coding genes, 41 tRNA genes, and 8 rRNA genes. The overall GC content was 37.19%, whereas the corresponding values of the LSC, SSC, and IR regions were 35.46%, 31.09%, and 43.06%, respectively. Phylogenetic analysis based on whole cp genome sequences of 20 Actinidia species showed that A. hemsleyana has the closest relationship with A.latifolia.
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spelling pubmed-85304742021-10-22 Characterization of the complete chloroplast genome of Actinidia hemsleyana Xiaoqiong, Qi Xiaodong, Xie Mingjuan, Yang Atak, Arif Caihong, Zhong Dawei, Li Mitochondrial DNA B Resour Mitogenome Announcement The completed chloroplast genome sequence of Actinidia hemsleyana, collected from eastern China, was firstly determined using next-generation sequencing (NGS) and bioinformatic analysis. The length of cp genome was 156,845 bp, including a large single-copy (LSC) region of 88,666 bp and a small single-copy (SSC) region of 20,543 bp, which were separated by a pair of inverted repeats (IRs) of 23,818 bp. The cp genome contained 132 genes, including 83 protein-coding genes, 41 tRNA genes, and 8 rRNA genes. The overall GC content was 37.19%, whereas the corresponding values of the LSC, SSC, and IR regions were 35.46%, 31.09%, and 43.06%, respectively. Phylogenetic analysis based on whole cp genome sequences of 20 Actinidia species showed that A. hemsleyana has the closest relationship with A.latifolia. Taylor & Francis 2021-10-20 /pmc/articles/PMC8530474/ /pubmed/34693017 http://dx.doi.org/10.1080/23802359.2021.1993100 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Xiaoqiong, Qi
Xiaodong, Xie
Mingjuan, Yang
Atak, Arif
Caihong, Zhong
Dawei, Li
Characterization of the complete chloroplast genome of Actinidia hemsleyana
title Characterization of the complete chloroplast genome of Actinidia hemsleyana
title_full Characterization of the complete chloroplast genome of Actinidia hemsleyana
title_fullStr Characterization of the complete chloroplast genome of Actinidia hemsleyana
title_full_unstemmed Characterization of the complete chloroplast genome of Actinidia hemsleyana
title_short Characterization of the complete chloroplast genome of Actinidia hemsleyana
title_sort characterization of the complete chloroplast genome of actinidia hemsleyana
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8530474/
https://www.ncbi.nlm.nih.gov/pubmed/34693017
http://dx.doi.org/10.1080/23802359.2021.1993100
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