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Characterization of the complete chloroplast genome of Actinidia hemsleyana
The completed chloroplast genome sequence of Actinidia hemsleyana, collected from eastern China, was firstly determined using next-generation sequencing (NGS) and bioinformatic analysis. The length of cp genome was 156,845 bp, including a large single-copy (LSC) region of 88,666 bp and a small singl...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8530474/ https://www.ncbi.nlm.nih.gov/pubmed/34693017 http://dx.doi.org/10.1080/23802359.2021.1993100 |
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author | Xiaoqiong, Qi Xiaodong, Xie Mingjuan, Yang Atak, Arif Caihong, Zhong Dawei, Li |
author_facet | Xiaoqiong, Qi Xiaodong, Xie Mingjuan, Yang Atak, Arif Caihong, Zhong Dawei, Li |
author_sort | Xiaoqiong, Qi |
collection | PubMed |
description | The completed chloroplast genome sequence of Actinidia hemsleyana, collected from eastern China, was firstly determined using next-generation sequencing (NGS) and bioinformatic analysis. The length of cp genome was 156,845 bp, including a large single-copy (LSC) region of 88,666 bp and a small single-copy (SSC) region of 20,543 bp, which were separated by a pair of inverted repeats (IRs) of 23,818 bp. The cp genome contained 132 genes, including 83 protein-coding genes, 41 tRNA genes, and 8 rRNA genes. The overall GC content was 37.19%, whereas the corresponding values of the LSC, SSC, and IR regions were 35.46%, 31.09%, and 43.06%, respectively. Phylogenetic analysis based on whole cp genome sequences of 20 Actinidia species showed that A. hemsleyana has the closest relationship with A.latifolia. |
format | Online Article Text |
id | pubmed-8530474 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-85304742021-10-22 Characterization of the complete chloroplast genome of Actinidia hemsleyana Xiaoqiong, Qi Xiaodong, Xie Mingjuan, Yang Atak, Arif Caihong, Zhong Dawei, Li Mitochondrial DNA B Resour Mitogenome Announcement The completed chloroplast genome sequence of Actinidia hemsleyana, collected from eastern China, was firstly determined using next-generation sequencing (NGS) and bioinformatic analysis. The length of cp genome was 156,845 bp, including a large single-copy (LSC) region of 88,666 bp and a small single-copy (SSC) region of 20,543 bp, which were separated by a pair of inverted repeats (IRs) of 23,818 bp. The cp genome contained 132 genes, including 83 protein-coding genes, 41 tRNA genes, and 8 rRNA genes. The overall GC content was 37.19%, whereas the corresponding values of the LSC, SSC, and IR regions were 35.46%, 31.09%, and 43.06%, respectively. Phylogenetic analysis based on whole cp genome sequences of 20 Actinidia species showed that A. hemsleyana has the closest relationship with A.latifolia. Taylor & Francis 2021-10-20 /pmc/articles/PMC8530474/ /pubmed/34693017 http://dx.doi.org/10.1080/23802359.2021.1993100 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Xiaoqiong, Qi Xiaodong, Xie Mingjuan, Yang Atak, Arif Caihong, Zhong Dawei, Li Characterization of the complete chloroplast genome of Actinidia hemsleyana |
title | Characterization of the complete chloroplast genome of Actinidia hemsleyana |
title_full | Characterization of the complete chloroplast genome of Actinidia hemsleyana |
title_fullStr | Characterization of the complete chloroplast genome of Actinidia hemsleyana |
title_full_unstemmed | Characterization of the complete chloroplast genome of Actinidia hemsleyana |
title_short | Characterization of the complete chloroplast genome of Actinidia hemsleyana |
title_sort | characterization of the complete chloroplast genome of actinidia hemsleyana |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8530474/ https://www.ncbi.nlm.nih.gov/pubmed/34693017 http://dx.doi.org/10.1080/23802359.2021.1993100 |
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