Characterization of the complete chloroplast genome of Sparganium glomeratum (Typhaceae) from Jilin Province, China and phylogenetic analysis

The complete chloroplast genome of Sparganium glomeratum was sequenced and assembled in this study. The circular genome is 160,391 bp in length and exhibits a typical quadripartite structure with a large single-copy (LSC, 87,660 bp) and small single-copy (SSC, 18,721 bp) regions, separated by a pair...

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Autores principales: Lu, Qi-Xiang, Ren, Lu-Jie, Wang, Ya-Nan, Xiao, Yao, Li, Yu-Dong, Ying, Jia-Nan, Zhang, Ying, Wang, Ruihong, Qi, Zhe-Chen, You, Zheng-Ying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8530496/
https://www.ncbi.nlm.nih.gov/pubmed/34693014
http://dx.doi.org/10.1080/23802359.2021.1991247
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author Lu, Qi-Xiang
Ren, Lu-Jie
Wang, Ya-Nan
Xiao, Yao
Li, Yu-Dong
Ying, Jia-Nan
Zhang, Ying
Wang, Ruihong
Qi, Zhe-Chen
You, Zheng-Ying
author_facet Lu, Qi-Xiang
Ren, Lu-Jie
Wang, Ya-Nan
Xiao, Yao
Li, Yu-Dong
Ying, Jia-Nan
Zhang, Ying
Wang, Ruihong
Qi, Zhe-Chen
You, Zheng-Ying
author_sort Lu, Qi-Xiang
collection PubMed
description The complete chloroplast genome of Sparganium glomeratum was sequenced and assembled in this study. The circular genome is 160,391 bp in length and exhibits a typical quadripartite structure with a large single-copy (LSC, 87,660 bp) and small single-copy (SSC, 18,721 bp) regions, separated by a pair of inverted repeats (IRs, 27,005 bp). The cp genome contains 113 unique genes, including 79 protein-coding, 30 tRNA, and four rRNA genes. The phylogenetic analysis within the Poales showed that Sparganium is monophyletic and most closely related to Typha. Within Sparganium, S. glomeratum is sister to the clade of S. stoloniferum and S. euricarpum. The work reported here will provide useful information for the evolutionary studies on the genus of Sparganium.
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spelling pubmed-85304962021-10-22 Characterization of the complete chloroplast genome of Sparganium glomeratum (Typhaceae) from Jilin Province, China and phylogenetic analysis Lu, Qi-Xiang Ren, Lu-Jie Wang, Ya-Nan Xiao, Yao Li, Yu-Dong Ying, Jia-Nan Zhang, Ying Wang, Ruihong Qi, Zhe-Chen You, Zheng-Ying Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Sparganium glomeratum was sequenced and assembled in this study. The circular genome is 160,391 bp in length and exhibits a typical quadripartite structure with a large single-copy (LSC, 87,660 bp) and small single-copy (SSC, 18,721 bp) regions, separated by a pair of inverted repeats (IRs, 27,005 bp). The cp genome contains 113 unique genes, including 79 protein-coding, 30 tRNA, and four rRNA genes. The phylogenetic analysis within the Poales showed that Sparganium is monophyletic and most closely related to Typha. Within Sparganium, S. glomeratum is sister to the clade of S. stoloniferum and S. euricarpum. The work reported here will provide useful information for the evolutionary studies on the genus of Sparganium. Taylor & Francis 2021-10-20 /pmc/articles/PMC8530496/ /pubmed/34693014 http://dx.doi.org/10.1080/23802359.2021.1991247 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Lu, Qi-Xiang
Ren, Lu-Jie
Wang, Ya-Nan
Xiao, Yao
Li, Yu-Dong
Ying, Jia-Nan
Zhang, Ying
Wang, Ruihong
Qi, Zhe-Chen
You, Zheng-Ying
Characterization of the complete chloroplast genome of Sparganium glomeratum (Typhaceae) from Jilin Province, China and phylogenetic analysis
title Characterization of the complete chloroplast genome of Sparganium glomeratum (Typhaceae) from Jilin Province, China and phylogenetic analysis
title_full Characterization of the complete chloroplast genome of Sparganium glomeratum (Typhaceae) from Jilin Province, China and phylogenetic analysis
title_fullStr Characterization of the complete chloroplast genome of Sparganium glomeratum (Typhaceae) from Jilin Province, China and phylogenetic analysis
title_full_unstemmed Characterization of the complete chloroplast genome of Sparganium glomeratum (Typhaceae) from Jilin Province, China and phylogenetic analysis
title_short Characterization of the complete chloroplast genome of Sparganium glomeratum (Typhaceae) from Jilin Province, China and phylogenetic analysis
title_sort characterization of the complete chloroplast genome of sparganium glomeratum (typhaceae) from jilin province, china and phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8530496/
https://www.ncbi.nlm.nih.gov/pubmed/34693014
http://dx.doi.org/10.1080/23802359.2021.1991247
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