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2D-to-3D image translation of complex nanoporous volumes using generative networks

Image-based characterization offers a powerful approach to studying geological porous media at the nanoscale and images are critical to understanding reactive transport mechanisms in reservoirs relevant to energy and sustainability technologies such as carbon sequestration, subsurface hydrogen stora...

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Autores principales: Anderson, Timothy I., Vega, Bolivia, McKinzie, Jesse, Aryana, Saman A., Kovscek, Anthony R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8531351/
https://www.ncbi.nlm.nih.gov/pubmed/34675247
http://dx.doi.org/10.1038/s41598-021-00080-5
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author Anderson, Timothy I.
Vega, Bolivia
McKinzie, Jesse
Aryana, Saman A.
Kovscek, Anthony R.
author_facet Anderson, Timothy I.
Vega, Bolivia
McKinzie, Jesse
Aryana, Saman A.
Kovscek, Anthony R.
author_sort Anderson, Timothy I.
collection PubMed
description Image-based characterization offers a powerful approach to studying geological porous media at the nanoscale and images are critical to understanding reactive transport mechanisms in reservoirs relevant to energy and sustainability technologies such as carbon sequestration, subsurface hydrogen storage, and natural gas recovery. Nanoimaging presents a trade off, however, between higher-contrast sample-destructive and lower-contrast sample-preserving imaging modalities. Furthermore, high-contrast imaging modalities often acquire only 2D images, while 3D volumes are needed to characterize fully a source rock sample. In this work, we present deep learning image translation models to predict high-contrast focused ion beam-scanning electron microscopy (FIB-SEM) image volumes from transmission X-ray microscopy (TXM) images when only 2D paired training data is available. We introduce a regularization method for improving 3D volume generation from 2D-to-2D deep learning image models and apply this approach to translate 3D TXM volumes to FIB-SEM fidelity. We then segment a predicted FIB-SEM volume into a flow simulation domain and calculate the sample apparent permeability using a lattice Boltzmann method (LBM) technique. Results show that our image translation approach produces simulation domains suitable for flow visualization and allows for accurate characterization of petrophysical properties from non-destructive imaging data.
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spelling pubmed-85313512021-10-22 2D-to-3D image translation of complex nanoporous volumes using generative networks Anderson, Timothy I. Vega, Bolivia McKinzie, Jesse Aryana, Saman A. Kovscek, Anthony R. Sci Rep Article Image-based characterization offers a powerful approach to studying geological porous media at the nanoscale and images are critical to understanding reactive transport mechanisms in reservoirs relevant to energy and sustainability technologies such as carbon sequestration, subsurface hydrogen storage, and natural gas recovery. Nanoimaging presents a trade off, however, between higher-contrast sample-destructive and lower-contrast sample-preserving imaging modalities. Furthermore, high-contrast imaging modalities often acquire only 2D images, while 3D volumes are needed to characterize fully a source rock sample. In this work, we present deep learning image translation models to predict high-contrast focused ion beam-scanning electron microscopy (FIB-SEM) image volumes from transmission X-ray microscopy (TXM) images when only 2D paired training data is available. We introduce a regularization method for improving 3D volume generation from 2D-to-2D deep learning image models and apply this approach to translate 3D TXM volumes to FIB-SEM fidelity. We then segment a predicted FIB-SEM volume into a flow simulation domain and calculate the sample apparent permeability using a lattice Boltzmann method (LBM) technique. Results show that our image translation approach produces simulation domains suitable for flow visualization and allows for accurate characterization of petrophysical properties from non-destructive imaging data. Nature Publishing Group UK 2021-10-21 /pmc/articles/PMC8531351/ /pubmed/34675247 http://dx.doi.org/10.1038/s41598-021-00080-5 Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Anderson, Timothy I.
Vega, Bolivia
McKinzie, Jesse
Aryana, Saman A.
Kovscek, Anthony R.
2D-to-3D image translation of complex nanoporous volumes using generative networks
title 2D-to-3D image translation of complex nanoporous volumes using generative networks
title_full 2D-to-3D image translation of complex nanoporous volumes using generative networks
title_fullStr 2D-to-3D image translation of complex nanoporous volumes using generative networks
title_full_unstemmed 2D-to-3D image translation of complex nanoporous volumes using generative networks
title_short 2D-to-3D image translation of complex nanoporous volumes using generative networks
title_sort 2d-to-3d image translation of complex nanoporous volumes using generative networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8531351/
https://www.ncbi.nlm.nih.gov/pubmed/34675247
http://dx.doi.org/10.1038/s41598-021-00080-5
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