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The nomogram based on the 6-lncRNA model can promote the prognosis prediction of patients with breast invasive carcinoma
Long non-coding RNA (lncRNA) is a prognostic biomarker for many types of cancer. Here, we aimed to study the prognostic value of lncRNA in Breast Invasive Carcinoma (BRCA). We downloaded expression profiles from The Cancer Genome Atlas (TCGA) datasets. Subsequently, we screened the differentially ex...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8531445/ https://www.ncbi.nlm.nih.gov/pubmed/34675301 http://dx.doi.org/10.1038/s41598-021-00364-w |
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author | Luo, Dankun Yao, Wenchao Wang, Qiang Yang, Qiu Liu, Xuxu Yang, Yang Zhang, Weihui Xue, Dongbo Ma, Biao |
author_facet | Luo, Dankun Yao, Wenchao Wang, Qiang Yang, Qiu Liu, Xuxu Yang, Yang Zhang, Weihui Xue, Dongbo Ma, Biao |
author_sort | Luo, Dankun |
collection | PubMed |
description | Long non-coding RNA (lncRNA) is a prognostic biomarker for many types of cancer. Here, we aimed to study the prognostic value of lncRNA in Breast Invasive Carcinoma (BRCA). We downloaded expression profiles from The Cancer Genome Atlas (TCGA) datasets. Subsequently, we screened the differentially expressed genes between normal tissues and tumor tissues. Univariate Cox, LASSO regression, and multivariate Cox regression analysis were used to construct a lncRNA prognostic model. Finally, a nomogram based on the lncRNAs model was developed, and weighted gene co-expression network analysis (WGCNA) was used to predict mRNAs related to the model, and to perform function and pathway enrichment. We constructed a 6-lncRNA prognostic model. Univariate and multivariate Cox regression analysis showed that the 6-lncRNA model could be used as an independent prognostic factor for BRCA patients. We developed a nomogram based on the lncRNAs model and age, and showed good performance in predicting the survival rates of BRCA patients. Also, functional pathway enrichment analysis showed that genes related to the model were enriched in cell cycle-related pathways. Tumor immune infiltration analysis showed that the types of immune cells and their expression levels in the high-risk group were significantly different from those in the low-risk group. In general, the 6-lncRNA prognostic model and nomogram could be used as a practical and reliable prognostic tool for invasive breast cancer. |
format | Online Article Text |
id | pubmed-8531445 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-85314452021-10-25 The nomogram based on the 6-lncRNA model can promote the prognosis prediction of patients with breast invasive carcinoma Luo, Dankun Yao, Wenchao Wang, Qiang Yang, Qiu Liu, Xuxu Yang, Yang Zhang, Weihui Xue, Dongbo Ma, Biao Sci Rep Article Long non-coding RNA (lncRNA) is a prognostic biomarker for many types of cancer. Here, we aimed to study the prognostic value of lncRNA in Breast Invasive Carcinoma (BRCA). We downloaded expression profiles from The Cancer Genome Atlas (TCGA) datasets. Subsequently, we screened the differentially expressed genes between normal tissues and tumor tissues. Univariate Cox, LASSO regression, and multivariate Cox regression analysis were used to construct a lncRNA prognostic model. Finally, a nomogram based on the lncRNAs model was developed, and weighted gene co-expression network analysis (WGCNA) was used to predict mRNAs related to the model, and to perform function and pathway enrichment. We constructed a 6-lncRNA prognostic model. Univariate and multivariate Cox regression analysis showed that the 6-lncRNA model could be used as an independent prognostic factor for BRCA patients. We developed a nomogram based on the lncRNAs model and age, and showed good performance in predicting the survival rates of BRCA patients. Also, functional pathway enrichment analysis showed that genes related to the model were enriched in cell cycle-related pathways. Tumor immune infiltration analysis showed that the types of immune cells and their expression levels in the high-risk group were significantly different from those in the low-risk group. In general, the 6-lncRNA prognostic model and nomogram could be used as a practical and reliable prognostic tool for invasive breast cancer. Nature Publishing Group UK 2021-10-21 /pmc/articles/PMC8531445/ /pubmed/34675301 http://dx.doi.org/10.1038/s41598-021-00364-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Luo, Dankun Yao, Wenchao Wang, Qiang Yang, Qiu Liu, Xuxu Yang, Yang Zhang, Weihui Xue, Dongbo Ma, Biao The nomogram based on the 6-lncRNA model can promote the prognosis prediction of patients with breast invasive carcinoma |
title | The nomogram based on the 6-lncRNA model can promote the prognosis prediction of patients with breast invasive carcinoma |
title_full | The nomogram based on the 6-lncRNA model can promote the prognosis prediction of patients with breast invasive carcinoma |
title_fullStr | The nomogram based on the 6-lncRNA model can promote the prognosis prediction of patients with breast invasive carcinoma |
title_full_unstemmed | The nomogram based on the 6-lncRNA model can promote the prognosis prediction of patients with breast invasive carcinoma |
title_short | The nomogram based on the 6-lncRNA model can promote the prognosis prediction of patients with breast invasive carcinoma |
title_sort | nomogram based on the 6-lncrna model can promote the prognosis prediction of patients with breast invasive carcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8531445/ https://www.ncbi.nlm.nih.gov/pubmed/34675301 http://dx.doi.org/10.1038/s41598-021-00364-w |
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