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Gene Mutation Annotation and Pedigree for Pulmonary Arterial Hypertension Patients in Han Chinese Patients

BACKGROUND: The etiology of pulmonary arterial hypertension (PAH) in the Han Chinese population is poorly understood. OBJECTIVES: The aim of this study was to assess gene variants and associated functional annotations for PAH in Han Chinese patients. METHODS: This is an ethnicity-based multi-centre...

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Autores principales: Wang, Mei-Tzu, Charng, Ming-Ji, Chi, Pei-Ling, Cheng, Chin-Chang, Hung, Cheng Chung, Huang, Wei-Chun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ubiquity Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8533654/
https://www.ncbi.nlm.nih.gov/pubmed/34900561
http://dx.doi.org/10.5334/gh.1002
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author Wang, Mei-Tzu
Charng, Ming-Ji
Chi, Pei-Ling
Cheng, Chin-Chang
Hung, Cheng Chung
Huang, Wei-Chun
author_facet Wang, Mei-Tzu
Charng, Ming-Ji
Chi, Pei-Ling
Cheng, Chin-Chang
Hung, Cheng Chung
Huang, Wei-Chun
author_sort Wang, Mei-Tzu
collection PubMed
description BACKGROUND: The etiology of pulmonary arterial hypertension (PAH) in the Han Chinese population is poorly understood. OBJECTIVES: The aim of this study was to assess gene variants and associated functional annotations for PAH in Han Chinese patients. METHODS: This is an ethnicity-based multi-centre study. Blood samples were collected from 20 PAH patients who volunteered for the study, and genetic tests were performed. The DAVID database was used to functionally annotate the genes BMPR2, ALK1, KCNK3, CAV1, and ENG. Associated diseases, functional categories, gene ontology, and protein interactions were analysed using the Functional Annotation Tool in the DAVID database. GEO and ClinVar databases were also used for further comparison with gene mutations in our study. RESULTS: PAH patient with gene mutations were female predominant except for a single male with a BMPR2 mutation. Locus variants in our study included ‘G410DfsX1’ in BMPR2, ‘ex7 L300P,’ ‘ex4 S110PfsX40,’ and ‘ex7 E295Afs96X’ in ALK1, ‘c.-2C>A (IVS1–2 C>A)’ in CAV1, and ‘ex8 D366Q’ in ENG were not found in the ClinVar database associated with PAH. In addition to BMP and TGF-β pathways, gene ontology of input genes in the DAVID database also included pathways associated with nitric oxide signaling and regulation. CONCLUSIONS: This Multi-centre study indicated that ‘G410DfsX1’ in BMPR2, ‘ex7 L300P,’ ‘ex4 S110PfsX40,’ ‘ex7 E295Afs96X’ in ALK1, ‘c.-2C>A (IVS1–2 C>A)’ in CAV1, and ‘ex8 D366Q’ in ENG were identified in Han Chinese patients with PAH. Females were more susceptible to PAH, and a relatively young age distribution was observed for patients with BMPR2 mutations.
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spelling pubmed-85336542021-12-10 Gene Mutation Annotation and Pedigree for Pulmonary Arterial Hypertension Patients in Han Chinese Patients Wang, Mei-Tzu Charng, Ming-Ji Chi, Pei-Ling Cheng, Chin-Chang Hung, Cheng Chung Huang, Wei-Chun Glob Heart Original Research BACKGROUND: The etiology of pulmonary arterial hypertension (PAH) in the Han Chinese population is poorly understood. OBJECTIVES: The aim of this study was to assess gene variants and associated functional annotations for PAH in Han Chinese patients. METHODS: This is an ethnicity-based multi-centre study. Blood samples were collected from 20 PAH patients who volunteered for the study, and genetic tests were performed. The DAVID database was used to functionally annotate the genes BMPR2, ALK1, KCNK3, CAV1, and ENG. Associated diseases, functional categories, gene ontology, and protein interactions were analysed using the Functional Annotation Tool in the DAVID database. GEO and ClinVar databases were also used for further comparison with gene mutations in our study. RESULTS: PAH patient with gene mutations were female predominant except for a single male with a BMPR2 mutation. Locus variants in our study included ‘G410DfsX1’ in BMPR2, ‘ex7 L300P,’ ‘ex4 S110PfsX40,’ and ‘ex7 E295Afs96X’ in ALK1, ‘c.-2C>A (IVS1–2 C>A)’ in CAV1, and ‘ex8 D366Q’ in ENG were not found in the ClinVar database associated with PAH. In addition to BMP and TGF-β pathways, gene ontology of input genes in the DAVID database also included pathways associated with nitric oxide signaling and regulation. CONCLUSIONS: This Multi-centre study indicated that ‘G410DfsX1’ in BMPR2, ‘ex7 L300P,’ ‘ex4 S110PfsX40,’ ‘ex7 E295Afs96X’ in ALK1, ‘c.-2C>A (IVS1–2 C>A)’ in CAV1, and ‘ex8 D366Q’ in ENG were identified in Han Chinese patients with PAH. Females were more susceptible to PAH, and a relatively young age distribution was observed for patients with BMPR2 mutations. Ubiquity Press 2021-10-18 /pmc/articles/PMC8533654/ /pubmed/34900561 http://dx.doi.org/10.5334/gh.1002 Text en Copyright: © 2021 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (CC-BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. See http://creativecommons.org/licenses/by/4.0/.
spellingShingle Original Research
Wang, Mei-Tzu
Charng, Ming-Ji
Chi, Pei-Ling
Cheng, Chin-Chang
Hung, Cheng Chung
Huang, Wei-Chun
Gene Mutation Annotation and Pedigree for Pulmonary Arterial Hypertension Patients in Han Chinese Patients
title Gene Mutation Annotation and Pedigree for Pulmonary Arterial Hypertension Patients in Han Chinese Patients
title_full Gene Mutation Annotation and Pedigree for Pulmonary Arterial Hypertension Patients in Han Chinese Patients
title_fullStr Gene Mutation Annotation and Pedigree for Pulmonary Arterial Hypertension Patients in Han Chinese Patients
title_full_unstemmed Gene Mutation Annotation and Pedigree for Pulmonary Arterial Hypertension Patients in Han Chinese Patients
title_short Gene Mutation Annotation and Pedigree for Pulmonary Arterial Hypertension Patients in Han Chinese Patients
title_sort gene mutation annotation and pedigree for pulmonary arterial hypertension patients in han chinese patients
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8533654/
https://www.ncbi.nlm.nih.gov/pubmed/34900561
http://dx.doi.org/10.5334/gh.1002
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