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Artificial Intelligence-Based Segmentation of Residual Tumor in Histopathology of Pancreatic Cancer after Neoadjuvant Treatment

SIMPLE SUMMARY: The use of neoadjuvant therapy (NAT) in patients with pancreatic ductal adenocarcinoma (PDAC) is increasing. Objective quantification of the histopathological response to NAT may be used to guide adjuvant treatment and compare the efficacy of neoadjuvant regimens. However, current tu...

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Autores principales: Janssen, Boris V., Theijse, Rutger, van Roessel, Stijn, de Ruiter, Rik, Berkel, Antonie, Huiskens, Joost, Busch, Olivier R., Wilmink, Johanna W., Kazemier, Geert, Valkema, Pieter, Farina, Arantza, Verheij, Joanne, de Boer, Onno J., Besselink, Marc G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8533716/
https://www.ncbi.nlm.nih.gov/pubmed/34680241
http://dx.doi.org/10.3390/cancers13205089
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author Janssen, Boris V.
Theijse, Rutger
van Roessel, Stijn
de Ruiter, Rik
Berkel, Antonie
Huiskens, Joost
Busch, Olivier R.
Wilmink, Johanna W.
Kazemier, Geert
Valkema, Pieter
Farina, Arantza
Verheij, Joanne
de Boer, Onno J.
Besselink, Marc G.
author_facet Janssen, Boris V.
Theijse, Rutger
van Roessel, Stijn
de Ruiter, Rik
Berkel, Antonie
Huiskens, Joost
Busch, Olivier R.
Wilmink, Johanna W.
Kazemier, Geert
Valkema, Pieter
Farina, Arantza
Verheij, Joanne
de Boer, Onno J.
Besselink, Marc G.
author_sort Janssen, Boris V.
collection PubMed
description SIMPLE SUMMARY: The use of neoadjuvant therapy (NAT) in patients with pancreatic ductal adenocarcinoma (PDAC) is increasing. Objective quantification of the histopathological response to NAT may be used to guide adjuvant treatment and compare the efficacy of neoadjuvant regimens. However, current tumor response scoring (TRS) systems suffer from interobserver variability, originating from subjective definitions, the sometimes challenging histology, and response heterogeneity throughout the tumor bed. This study investigates if artificial intelligence-based segmentation of residual tumor burden in histopathology of PDAC after NAT may offer a more objective and reproducible TRS solution. ABSTRACT: Background: Histologic examination of resected pancreatic cancer after neoadjuvant therapy (NAT) is used to assess the effect of NAT and may guide the choice for adjuvant treatment. However, evaluating residual tumor burden in pancreatic cancer is challenging given tumor response heterogeneity and challenging histomorphology. Artificial intelligence techniques may offer a more reproducible approach. Methods: From 64 patients, one H&E-stained slide of resected pancreatic cancer after NAT was digitized. Three separate classes were manually outlined in each slide (i.e., tumor, normal ducts, and remaining epithelium). Corresponding segmentation masks and patches were generated and distributed over training, validation, and test sets. Modified U-nets with varying encoders were trained, and F1 scores were obtained to express segmentation accuracy. Results: The highest mean segmentation accuracy was obtained using modified U-nets with a DenseNet161 encoder. Tumor tissue was segmented with a high mean F1 score of 0.86, while the overall multiclass average F1 score was 0.82. Conclusions: This study shows that artificial intelligence-based assessment of residual tumor burden is feasible given the promising obtained F1 scores for tumor segmentation. This model could be developed into a tool for the objective evaluation of the response to NAT and may potentially guide the choice for adjuvant treatment.
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spelling pubmed-85337162021-10-23 Artificial Intelligence-Based Segmentation of Residual Tumor in Histopathology of Pancreatic Cancer after Neoadjuvant Treatment Janssen, Boris V. Theijse, Rutger van Roessel, Stijn de Ruiter, Rik Berkel, Antonie Huiskens, Joost Busch, Olivier R. Wilmink, Johanna W. Kazemier, Geert Valkema, Pieter Farina, Arantza Verheij, Joanne de Boer, Onno J. Besselink, Marc G. Cancers (Basel) Article SIMPLE SUMMARY: The use of neoadjuvant therapy (NAT) in patients with pancreatic ductal adenocarcinoma (PDAC) is increasing. Objective quantification of the histopathological response to NAT may be used to guide adjuvant treatment and compare the efficacy of neoadjuvant regimens. However, current tumor response scoring (TRS) systems suffer from interobserver variability, originating from subjective definitions, the sometimes challenging histology, and response heterogeneity throughout the tumor bed. This study investigates if artificial intelligence-based segmentation of residual tumor burden in histopathology of PDAC after NAT may offer a more objective and reproducible TRS solution. ABSTRACT: Background: Histologic examination of resected pancreatic cancer after neoadjuvant therapy (NAT) is used to assess the effect of NAT and may guide the choice for adjuvant treatment. However, evaluating residual tumor burden in pancreatic cancer is challenging given tumor response heterogeneity and challenging histomorphology. Artificial intelligence techniques may offer a more reproducible approach. Methods: From 64 patients, one H&E-stained slide of resected pancreatic cancer after NAT was digitized. Three separate classes were manually outlined in each slide (i.e., tumor, normal ducts, and remaining epithelium). Corresponding segmentation masks and patches were generated and distributed over training, validation, and test sets. Modified U-nets with varying encoders were trained, and F1 scores were obtained to express segmentation accuracy. Results: The highest mean segmentation accuracy was obtained using modified U-nets with a DenseNet161 encoder. Tumor tissue was segmented with a high mean F1 score of 0.86, while the overall multiclass average F1 score was 0.82. Conclusions: This study shows that artificial intelligence-based assessment of residual tumor burden is feasible given the promising obtained F1 scores for tumor segmentation. This model could be developed into a tool for the objective evaluation of the response to NAT and may potentially guide the choice for adjuvant treatment. MDPI 2021-10-12 /pmc/articles/PMC8533716/ /pubmed/34680241 http://dx.doi.org/10.3390/cancers13205089 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Janssen, Boris V.
Theijse, Rutger
van Roessel, Stijn
de Ruiter, Rik
Berkel, Antonie
Huiskens, Joost
Busch, Olivier R.
Wilmink, Johanna W.
Kazemier, Geert
Valkema, Pieter
Farina, Arantza
Verheij, Joanne
de Boer, Onno J.
Besselink, Marc G.
Artificial Intelligence-Based Segmentation of Residual Tumor in Histopathology of Pancreatic Cancer after Neoadjuvant Treatment
title Artificial Intelligence-Based Segmentation of Residual Tumor in Histopathology of Pancreatic Cancer after Neoadjuvant Treatment
title_full Artificial Intelligence-Based Segmentation of Residual Tumor in Histopathology of Pancreatic Cancer after Neoadjuvant Treatment
title_fullStr Artificial Intelligence-Based Segmentation of Residual Tumor in Histopathology of Pancreatic Cancer after Neoadjuvant Treatment
title_full_unstemmed Artificial Intelligence-Based Segmentation of Residual Tumor in Histopathology of Pancreatic Cancer after Neoadjuvant Treatment
title_short Artificial Intelligence-Based Segmentation of Residual Tumor in Histopathology of Pancreatic Cancer after Neoadjuvant Treatment
title_sort artificial intelligence-based segmentation of residual tumor in histopathology of pancreatic cancer after neoadjuvant treatment
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8533716/
https://www.ncbi.nlm.nih.gov/pubmed/34680241
http://dx.doi.org/10.3390/cancers13205089
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