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Machine Learning Assisted Classification of Cell Lines and Cell States on Quantitative Phase Images
In this report, we present implementation and validation of machine-learning classifiers for distinguishing between cell types (HeLa, A549, 3T3 cell lines) and states (live, necrosis, apoptosis) based on the analysis of optical parameters derived from cell phase images. Validation of the developed c...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8533984/ https://www.ncbi.nlm.nih.gov/pubmed/34685568 http://dx.doi.org/10.3390/cells10102587 |
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author | Belashov, Andrey V. Zhikhoreva, Anna A. Belyaeva, Tatiana N. Salova, Anna V. Kornilova, Elena S. Semenova, Irina V. Vasyutinskii, Oleg S. |
author_facet | Belashov, Andrey V. Zhikhoreva, Anna A. Belyaeva, Tatiana N. Salova, Anna V. Kornilova, Elena S. Semenova, Irina V. Vasyutinskii, Oleg S. |
author_sort | Belashov, Andrey V. |
collection | PubMed |
description | In this report, we present implementation and validation of machine-learning classifiers for distinguishing between cell types (HeLa, A549, 3T3 cell lines) and states (live, necrosis, apoptosis) based on the analysis of optical parameters derived from cell phase images. Validation of the developed classifier shows the accuracy for distinguishing between the three cell types of about 93% and between different cell states of the same cell line of about 89%. In the field test of the developed algorithm, we demonstrate successful evaluation of the temporal dynamics of relative amounts of live, apoptotic and necrotic cells after photodynamic treatment at different doses. |
format | Online Article Text |
id | pubmed-8533984 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-85339842021-10-23 Machine Learning Assisted Classification of Cell Lines and Cell States on Quantitative Phase Images Belashov, Andrey V. Zhikhoreva, Anna A. Belyaeva, Tatiana N. Salova, Anna V. Kornilova, Elena S. Semenova, Irina V. Vasyutinskii, Oleg S. Cells Article In this report, we present implementation and validation of machine-learning classifiers for distinguishing between cell types (HeLa, A549, 3T3 cell lines) and states (live, necrosis, apoptosis) based on the analysis of optical parameters derived from cell phase images. Validation of the developed classifier shows the accuracy for distinguishing between the three cell types of about 93% and between different cell states of the same cell line of about 89%. In the field test of the developed algorithm, we demonstrate successful evaluation of the temporal dynamics of relative amounts of live, apoptotic and necrotic cells after photodynamic treatment at different doses. MDPI 2021-09-29 /pmc/articles/PMC8533984/ /pubmed/34685568 http://dx.doi.org/10.3390/cells10102587 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Belashov, Andrey V. Zhikhoreva, Anna A. Belyaeva, Tatiana N. Salova, Anna V. Kornilova, Elena S. Semenova, Irina V. Vasyutinskii, Oleg S. Machine Learning Assisted Classification of Cell Lines and Cell States on Quantitative Phase Images |
title | Machine Learning Assisted Classification of Cell Lines and Cell States on Quantitative Phase Images |
title_full | Machine Learning Assisted Classification of Cell Lines and Cell States on Quantitative Phase Images |
title_fullStr | Machine Learning Assisted Classification of Cell Lines and Cell States on Quantitative Phase Images |
title_full_unstemmed | Machine Learning Assisted Classification of Cell Lines and Cell States on Quantitative Phase Images |
title_short | Machine Learning Assisted Classification of Cell Lines and Cell States on Quantitative Phase Images |
title_sort | machine learning assisted classification of cell lines and cell states on quantitative phase images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8533984/ https://www.ncbi.nlm.nih.gov/pubmed/34685568 http://dx.doi.org/10.3390/cells10102587 |
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