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Automated Segmentation of Median Nerve in Dynamic Sonography Using Deep Learning: Evaluation of Model Performance

There is an emerging trend to employ dynamic sonography in the diagnosis of entrapment neuropathy, which exhibits aberrant spatiotemporal characteristics of the entrapped nerve when adjacent tissues move. However, the manual tracking of the entrapped nerve in consecutive images demands tons of human...

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Autores principales: Wu, Chueh-Hung, Syu, Wei-Ting, Lin, Meng-Ting, Yeh, Cheng-Liang, Boudier-Revéret, Mathieu, Hsiao, Ming-Yen, Kuo, Po-Ling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8534332/
https://www.ncbi.nlm.nih.gov/pubmed/34679591
http://dx.doi.org/10.3390/diagnostics11101893
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author Wu, Chueh-Hung
Syu, Wei-Ting
Lin, Meng-Ting
Yeh, Cheng-Liang
Boudier-Revéret, Mathieu
Hsiao, Ming-Yen
Kuo, Po-Ling
author_facet Wu, Chueh-Hung
Syu, Wei-Ting
Lin, Meng-Ting
Yeh, Cheng-Liang
Boudier-Revéret, Mathieu
Hsiao, Ming-Yen
Kuo, Po-Ling
author_sort Wu, Chueh-Hung
collection PubMed
description There is an emerging trend to employ dynamic sonography in the diagnosis of entrapment neuropathy, which exhibits aberrant spatiotemporal characteristics of the entrapped nerve when adjacent tissues move. However, the manual tracking of the entrapped nerve in consecutive images demands tons of human labors and impedes its popularity clinically. Here we evaluated the performance of automated median nerve segmentation in dynamic sonography using a variety of deep learning models pretrained with ImageNet, including DeepLabV3+, U-Net, FPN, and Mask-R-CNN. Dynamic ultrasound images of the median nerve at across wrist level were acquired from 52 subjects diagnosed as carpal tunnel syndrome when they moved their fingers. The videos of 16 subjects exhibiting diverse appearance and that of the remaining 36 subjects were used for model test and training, respectively. The centroid, circularity, perimeter, and cross section area of the median nerve in individual frame were automatically determined from the inferred nerve. The model performance was evaluated by the score of intersection over union (IoU) between the annotated and model-predicted data. We found that both DeepLabV3+ and Mask R-CNN predicted median nerve the best with averaged IOU scores close to 0.83, which indicates the feasibility of automated median nerve segmentation in dynamic sonography using deep learning.
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spelling pubmed-85343322021-10-23 Automated Segmentation of Median Nerve in Dynamic Sonography Using Deep Learning: Evaluation of Model Performance Wu, Chueh-Hung Syu, Wei-Ting Lin, Meng-Ting Yeh, Cheng-Liang Boudier-Revéret, Mathieu Hsiao, Ming-Yen Kuo, Po-Ling Diagnostics (Basel) Article There is an emerging trend to employ dynamic sonography in the diagnosis of entrapment neuropathy, which exhibits aberrant spatiotemporal characteristics of the entrapped nerve when adjacent tissues move. However, the manual tracking of the entrapped nerve in consecutive images demands tons of human labors and impedes its popularity clinically. Here we evaluated the performance of automated median nerve segmentation in dynamic sonography using a variety of deep learning models pretrained with ImageNet, including DeepLabV3+, U-Net, FPN, and Mask-R-CNN. Dynamic ultrasound images of the median nerve at across wrist level were acquired from 52 subjects diagnosed as carpal tunnel syndrome when they moved their fingers. The videos of 16 subjects exhibiting diverse appearance and that of the remaining 36 subjects were used for model test and training, respectively. The centroid, circularity, perimeter, and cross section area of the median nerve in individual frame were automatically determined from the inferred nerve. The model performance was evaluated by the score of intersection over union (IoU) between the annotated and model-predicted data. We found that both DeepLabV3+ and Mask R-CNN predicted median nerve the best with averaged IOU scores close to 0.83, which indicates the feasibility of automated median nerve segmentation in dynamic sonography using deep learning. MDPI 2021-10-14 /pmc/articles/PMC8534332/ /pubmed/34679591 http://dx.doi.org/10.3390/diagnostics11101893 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wu, Chueh-Hung
Syu, Wei-Ting
Lin, Meng-Ting
Yeh, Cheng-Liang
Boudier-Revéret, Mathieu
Hsiao, Ming-Yen
Kuo, Po-Ling
Automated Segmentation of Median Nerve in Dynamic Sonography Using Deep Learning: Evaluation of Model Performance
title Automated Segmentation of Median Nerve in Dynamic Sonography Using Deep Learning: Evaluation of Model Performance
title_full Automated Segmentation of Median Nerve in Dynamic Sonography Using Deep Learning: Evaluation of Model Performance
title_fullStr Automated Segmentation of Median Nerve in Dynamic Sonography Using Deep Learning: Evaluation of Model Performance
title_full_unstemmed Automated Segmentation of Median Nerve in Dynamic Sonography Using Deep Learning: Evaluation of Model Performance
title_short Automated Segmentation of Median Nerve in Dynamic Sonography Using Deep Learning: Evaluation of Model Performance
title_sort automated segmentation of median nerve in dynamic sonography using deep learning: evaluation of model performance
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8534332/
https://www.ncbi.nlm.nih.gov/pubmed/34679591
http://dx.doi.org/10.3390/diagnostics11101893
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