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Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions

Motivated by the sidewise motions of dynein motors shown in experiments, we use a variant of the exclusion process to model the multistep dynamics of dyneins on a cylinder with open ends. Due to the varied step sizes of the particles in a quasi-two-dimensional topology, we observe the emergence of a...

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Autores principales: Nandi, Riya, Täuber, Uwe C., Priyanka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8534927/
https://www.ncbi.nlm.nih.gov/pubmed/34682067
http://dx.doi.org/10.3390/e23101343
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author Nandi, Riya
Täuber, Uwe C.
Priyanka,
author_facet Nandi, Riya
Täuber, Uwe C.
Priyanka,
author_sort Nandi, Riya
collection PubMed
description Motivated by the sidewise motions of dynein motors shown in experiments, we use a variant of the exclusion process to model the multistep dynamics of dyneins on a cylinder with open ends. Due to the varied step sizes of the particles in a quasi-two-dimensional topology, we observe the emergence of a novel phase diagram depending on the various load conditions. Under high-load conditions, our numerical findings yield results similar to the TASEP model with the presence of all three standard TASEP phases, namely the low-density (LD), high-density (HD), and maximal-current (MC) phases. However, for medium- to low-load conditions, for all chosen influx and outflux rates, we only observe the LD and HD phases, and the maximal-current phase disappears. Further, we also measure the dynamics for a single dynein particle which is logarithmically slower than a TASEP particle with a shorter waiting time. Our results also confirm experimental observations of the dwell time distribution: The dwell time distribution for dyneins is exponential in less crowded conditions, whereas a double exponential emerges under overcrowded conditions.
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spelling pubmed-85349272021-10-23 Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions Nandi, Riya Täuber, Uwe C. Priyanka, Entropy (Basel) Article Motivated by the sidewise motions of dynein motors shown in experiments, we use a variant of the exclusion process to model the multistep dynamics of dyneins on a cylinder with open ends. Due to the varied step sizes of the particles in a quasi-two-dimensional topology, we observe the emergence of a novel phase diagram depending on the various load conditions. Under high-load conditions, our numerical findings yield results similar to the TASEP model with the presence of all three standard TASEP phases, namely the low-density (LD), high-density (HD), and maximal-current (MC) phases. However, for medium- to low-load conditions, for all chosen influx and outflux rates, we only observe the LD and HD phases, and the maximal-current phase disappears. Further, we also measure the dynamics for a single dynein particle which is logarithmically slower than a TASEP particle with a shorter waiting time. Our results also confirm experimental observations of the dwell time distribution: The dwell time distribution for dyneins is exponential in less crowded conditions, whereas a double exponential emerges under overcrowded conditions. MDPI 2021-10-14 /pmc/articles/PMC8534927/ /pubmed/34682067 http://dx.doi.org/10.3390/e23101343 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Nandi, Riya
Täuber, Uwe C.
Priyanka,
Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions
title Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions
title_full Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions
title_fullStr Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions
title_full_unstemmed Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions
title_short Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions
title_sort dynein-inspired multilane exclusion process with open boundary conditions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8534927/
https://www.ncbi.nlm.nih.gov/pubmed/34682067
http://dx.doi.org/10.3390/e23101343
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