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Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions
Motivated by the sidewise motions of dynein motors shown in experiments, we use a variant of the exclusion process to model the multistep dynamics of dyneins on a cylinder with open ends. Due to the varied step sizes of the particles in a quasi-two-dimensional topology, we observe the emergence of a...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8534927/ https://www.ncbi.nlm.nih.gov/pubmed/34682067 http://dx.doi.org/10.3390/e23101343 |
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author | Nandi, Riya Täuber, Uwe C. Priyanka, |
author_facet | Nandi, Riya Täuber, Uwe C. Priyanka, |
author_sort | Nandi, Riya |
collection | PubMed |
description | Motivated by the sidewise motions of dynein motors shown in experiments, we use a variant of the exclusion process to model the multistep dynamics of dyneins on a cylinder with open ends. Due to the varied step sizes of the particles in a quasi-two-dimensional topology, we observe the emergence of a novel phase diagram depending on the various load conditions. Under high-load conditions, our numerical findings yield results similar to the TASEP model with the presence of all three standard TASEP phases, namely the low-density (LD), high-density (HD), and maximal-current (MC) phases. However, for medium- to low-load conditions, for all chosen influx and outflux rates, we only observe the LD and HD phases, and the maximal-current phase disappears. Further, we also measure the dynamics for a single dynein particle which is logarithmically slower than a TASEP particle with a shorter waiting time. Our results also confirm experimental observations of the dwell time distribution: The dwell time distribution for dyneins is exponential in less crowded conditions, whereas a double exponential emerges under overcrowded conditions. |
format | Online Article Text |
id | pubmed-8534927 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-85349272021-10-23 Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions Nandi, Riya Täuber, Uwe C. Priyanka, Entropy (Basel) Article Motivated by the sidewise motions of dynein motors shown in experiments, we use a variant of the exclusion process to model the multistep dynamics of dyneins on a cylinder with open ends. Due to the varied step sizes of the particles in a quasi-two-dimensional topology, we observe the emergence of a novel phase diagram depending on the various load conditions. Under high-load conditions, our numerical findings yield results similar to the TASEP model with the presence of all three standard TASEP phases, namely the low-density (LD), high-density (HD), and maximal-current (MC) phases. However, for medium- to low-load conditions, for all chosen influx and outflux rates, we only observe the LD and HD phases, and the maximal-current phase disappears. Further, we also measure the dynamics for a single dynein particle which is logarithmically slower than a TASEP particle with a shorter waiting time. Our results also confirm experimental observations of the dwell time distribution: The dwell time distribution for dyneins is exponential in less crowded conditions, whereas a double exponential emerges under overcrowded conditions. MDPI 2021-10-14 /pmc/articles/PMC8534927/ /pubmed/34682067 http://dx.doi.org/10.3390/e23101343 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Nandi, Riya Täuber, Uwe C. Priyanka, Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions |
title | Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions |
title_full | Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions |
title_fullStr | Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions |
title_full_unstemmed | Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions |
title_short | Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions |
title_sort | dynein-inspired multilane exclusion process with open boundary conditions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8534927/ https://www.ncbi.nlm.nih.gov/pubmed/34682067 http://dx.doi.org/10.3390/e23101343 |
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