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Local Integral Regression Network for Cell Nuclei Detection †
Nuclei detection is a fundamental task in the field of histopathology image analysis and remains challenging due to cellular heterogeneity. Recent studies explore convolutional neural networks to either isolate them with sophisticated boundaries (segmentation-based methods) or locate the centroids o...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535160/ https://www.ncbi.nlm.nih.gov/pubmed/34682060 http://dx.doi.org/10.3390/e23101336 |
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author | Zhou, Xiao Gu, Miao Cheng, Zhen |
author_facet | Zhou, Xiao Gu, Miao Cheng, Zhen |
author_sort | Zhou, Xiao |
collection | PubMed |
description | Nuclei detection is a fundamental task in the field of histopathology image analysis and remains challenging due to cellular heterogeneity. Recent studies explore convolutional neural networks to either isolate them with sophisticated boundaries (segmentation-based methods) or locate the centroids of the nuclei (counting-based approaches). Although these two methods have demonstrated superior success, their fully supervised training demands considerable and laborious pixel-wise annotations manually labeled by pathology experts. To alleviate such tedious effort and reduce the annotation cost, we propose a novel local integral regression network (LIRNet) that allows both fully and weakly supervised learning (FSL/WSL) frameworks for nuclei detection. Furthermore, the LIRNet can output an exquisite density map of nuclei, in which the localization of each nucleus is barely affected by the post-processing algorithms. The quantitative experimental results demonstrate that the FSL version of the LIRNet achieves a state-of-the-art performance compared to other counterparts. In addition, the WSL version has exhibited a competitive detection performance and an effortless data annotation that requires only 17.5% of the annotation effort. |
format | Online Article Text |
id | pubmed-8535160 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-85351602021-10-23 Local Integral Regression Network for Cell Nuclei Detection † Zhou, Xiao Gu, Miao Cheng, Zhen Entropy (Basel) Article Nuclei detection is a fundamental task in the field of histopathology image analysis and remains challenging due to cellular heterogeneity. Recent studies explore convolutional neural networks to either isolate them with sophisticated boundaries (segmentation-based methods) or locate the centroids of the nuclei (counting-based approaches). Although these two methods have demonstrated superior success, their fully supervised training demands considerable and laborious pixel-wise annotations manually labeled by pathology experts. To alleviate such tedious effort and reduce the annotation cost, we propose a novel local integral regression network (LIRNet) that allows both fully and weakly supervised learning (FSL/WSL) frameworks for nuclei detection. Furthermore, the LIRNet can output an exquisite density map of nuclei, in which the localization of each nucleus is barely affected by the post-processing algorithms. The quantitative experimental results demonstrate that the FSL version of the LIRNet achieves a state-of-the-art performance compared to other counterparts. In addition, the WSL version has exhibited a competitive detection performance and an effortless data annotation that requires only 17.5% of the annotation effort. MDPI 2021-10-14 /pmc/articles/PMC8535160/ /pubmed/34682060 http://dx.doi.org/10.3390/e23101336 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zhou, Xiao Gu, Miao Cheng, Zhen Local Integral Regression Network for Cell Nuclei Detection † |
title | Local Integral Regression Network for Cell Nuclei Detection † |
title_full | Local Integral Regression Network for Cell Nuclei Detection † |
title_fullStr | Local Integral Regression Network for Cell Nuclei Detection † |
title_full_unstemmed | Local Integral Regression Network for Cell Nuclei Detection † |
title_short | Local Integral Regression Network for Cell Nuclei Detection † |
title_sort | local integral regression network for cell nuclei detection † |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535160/ https://www.ncbi.nlm.nih.gov/pubmed/34682060 http://dx.doi.org/10.3390/e23101336 |
work_keys_str_mv | AT zhouxiao localintegralregressionnetworkforcellnucleidetection AT gumiao localintegralregressionnetworkforcellnucleidetection AT chengzhen localintegralregressionnetworkforcellnucleidetection |