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Local Integral Regression Network for Cell Nuclei Detection †

Nuclei detection is a fundamental task in the field of histopathology image analysis and remains challenging due to cellular heterogeneity. Recent studies explore convolutional neural networks to either isolate them with sophisticated boundaries (segmentation-based methods) or locate the centroids o...

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Autores principales: Zhou, Xiao, Gu, Miao, Cheng, Zhen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535160/
https://www.ncbi.nlm.nih.gov/pubmed/34682060
http://dx.doi.org/10.3390/e23101336
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author Zhou, Xiao
Gu, Miao
Cheng, Zhen
author_facet Zhou, Xiao
Gu, Miao
Cheng, Zhen
author_sort Zhou, Xiao
collection PubMed
description Nuclei detection is a fundamental task in the field of histopathology image analysis and remains challenging due to cellular heterogeneity. Recent studies explore convolutional neural networks to either isolate them with sophisticated boundaries (segmentation-based methods) or locate the centroids of the nuclei (counting-based approaches). Although these two methods have demonstrated superior success, their fully supervised training demands considerable and laborious pixel-wise annotations manually labeled by pathology experts. To alleviate such tedious effort and reduce the annotation cost, we propose a novel local integral regression network (LIRNet) that allows both fully and weakly supervised learning (FSL/WSL) frameworks for nuclei detection. Furthermore, the LIRNet can output an exquisite density map of nuclei, in which the localization of each nucleus is barely affected by the post-processing algorithms. The quantitative experimental results demonstrate that the FSL version of the LIRNet achieves a state-of-the-art performance compared to other counterparts. In addition, the WSL version has exhibited a competitive detection performance and an effortless data annotation that requires only 17.5% of the annotation effort.
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spelling pubmed-85351602021-10-23 Local Integral Regression Network for Cell Nuclei Detection † Zhou, Xiao Gu, Miao Cheng, Zhen Entropy (Basel) Article Nuclei detection is a fundamental task in the field of histopathology image analysis and remains challenging due to cellular heterogeneity. Recent studies explore convolutional neural networks to either isolate them with sophisticated boundaries (segmentation-based methods) or locate the centroids of the nuclei (counting-based approaches). Although these two methods have demonstrated superior success, their fully supervised training demands considerable and laborious pixel-wise annotations manually labeled by pathology experts. To alleviate such tedious effort and reduce the annotation cost, we propose a novel local integral regression network (LIRNet) that allows both fully and weakly supervised learning (FSL/WSL) frameworks for nuclei detection. Furthermore, the LIRNet can output an exquisite density map of nuclei, in which the localization of each nucleus is barely affected by the post-processing algorithms. The quantitative experimental results demonstrate that the FSL version of the LIRNet achieves a state-of-the-art performance compared to other counterparts. In addition, the WSL version has exhibited a competitive detection performance and an effortless data annotation that requires only 17.5% of the annotation effort. MDPI 2021-10-14 /pmc/articles/PMC8535160/ /pubmed/34682060 http://dx.doi.org/10.3390/e23101336 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhou, Xiao
Gu, Miao
Cheng, Zhen
Local Integral Regression Network for Cell Nuclei Detection †
title Local Integral Regression Network for Cell Nuclei Detection †
title_full Local Integral Regression Network for Cell Nuclei Detection †
title_fullStr Local Integral Regression Network for Cell Nuclei Detection †
title_full_unstemmed Local Integral Regression Network for Cell Nuclei Detection †
title_short Local Integral Regression Network for Cell Nuclei Detection †
title_sort local integral regression network for cell nuclei detection †
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535160/
https://www.ncbi.nlm.nih.gov/pubmed/34682060
http://dx.doi.org/10.3390/e23101336
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