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Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease

Chronic kidney disease is one of the most important causes of mortality worldwide, but a shortage of nephrology pathologists has led to delays or errors in its diagnosis and treatment. Immunofluorescence (IF) images of patients with IgA nephropathy (IgAN), membranous nephropathy (MN), diabetic nephr...

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Autores principales: Pan, Sai, Fu, Yibing, Chen, Pu, Liu, Jiaona, Liu, Weicen, Wang, Xiaofei, Cai, Guangyan, Yin, Zhong, Wu, Jie, Tang, Li, Wang, Yong, Duan, Shuwei, Dai, Ning, Jiang, Lai, Xu, Mai, Chen, Xiangmei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535636/
https://www.ncbi.nlm.nih.gov/pubmed/34682567
http://dx.doi.org/10.3390/ijerph182010798
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author Pan, Sai
Fu, Yibing
Chen, Pu
Liu, Jiaona
Liu, Weicen
Wang, Xiaofei
Cai, Guangyan
Yin, Zhong
Wu, Jie
Tang, Li
Wang, Yong
Duan, Shuwei
Dai, Ning
Jiang, Lai
Xu, Mai
Chen, Xiangmei
author_facet Pan, Sai
Fu, Yibing
Chen, Pu
Liu, Jiaona
Liu, Weicen
Wang, Xiaofei
Cai, Guangyan
Yin, Zhong
Wu, Jie
Tang, Li
Wang, Yong
Duan, Shuwei
Dai, Ning
Jiang, Lai
Xu, Mai
Chen, Xiangmei
author_sort Pan, Sai
collection PubMed
description Chronic kidney disease is one of the most important causes of mortality worldwide, but a shortage of nephrology pathologists has led to delays or errors in its diagnosis and treatment. Immunofluorescence (IF) images of patients with IgA nephropathy (IgAN), membranous nephropathy (MN), diabetic nephropathy (DN), and lupus nephritis (LN) were obtained from the General Hospital of Chinese PLA. The data were divided into training and test data. To simulate the inaccurate focus of the fluorescence microscope, the Gaussian method was employed to blur the IF images. We proposed a novel multi-task learning (MTL) method for image quality assessment, de-blurring, and disease classification tasks. A total of 1608 patients’ IF images were included—1289 in the training set and 319 in the test set. For non-blurred IF images, the classification accuracy of the test set was 0.97, with an AUC of 1.000. For blurred IF images, the proposed MTL method had a higher accuracy (0.94 vs. 0.93, p < 0.01) and higher AUC (0.993 vs. 0.986) than the common MTL method. The novel MTL method not only diagnosed four types of kidney diseases through blurred IF images but also showed good performance in two auxiliary tasks: image quality assessment and de-blurring.
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spelling pubmed-85356362021-10-23 Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease Pan, Sai Fu, Yibing Chen, Pu Liu, Jiaona Liu, Weicen Wang, Xiaofei Cai, Guangyan Yin, Zhong Wu, Jie Tang, Li Wang, Yong Duan, Shuwei Dai, Ning Jiang, Lai Xu, Mai Chen, Xiangmei Int J Environ Res Public Health Article Chronic kidney disease is one of the most important causes of mortality worldwide, but a shortage of nephrology pathologists has led to delays or errors in its diagnosis and treatment. Immunofluorescence (IF) images of patients with IgA nephropathy (IgAN), membranous nephropathy (MN), diabetic nephropathy (DN), and lupus nephritis (LN) were obtained from the General Hospital of Chinese PLA. The data were divided into training and test data. To simulate the inaccurate focus of the fluorescence microscope, the Gaussian method was employed to blur the IF images. We proposed a novel multi-task learning (MTL) method for image quality assessment, de-blurring, and disease classification tasks. A total of 1608 patients’ IF images were included—1289 in the training set and 319 in the test set. For non-blurred IF images, the classification accuracy of the test set was 0.97, with an AUC of 1.000. For blurred IF images, the proposed MTL method had a higher accuracy (0.94 vs. 0.93, p < 0.01) and higher AUC (0.993 vs. 0.986) than the common MTL method. The novel MTL method not only diagnosed four types of kidney diseases through blurred IF images but also showed good performance in two auxiliary tasks: image quality assessment and de-blurring. MDPI 2021-10-15 /pmc/articles/PMC8535636/ /pubmed/34682567 http://dx.doi.org/10.3390/ijerph182010798 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Pan, Sai
Fu, Yibing
Chen, Pu
Liu, Jiaona
Liu, Weicen
Wang, Xiaofei
Cai, Guangyan
Yin, Zhong
Wu, Jie
Tang, Li
Wang, Yong
Duan, Shuwei
Dai, Ning
Jiang, Lai
Xu, Mai
Chen, Xiangmei
Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease
title Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease
title_full Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease
title_fullStr Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease
title_full_unstemmed Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease
title_short Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease
title_sort multi-task learning-based immunofluorescence classification of kidney disease
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535636/
https://www.ncbi.nlm.nih.gov/pubmed/34682567
http://dx.doi.org/10.3390/ijerph182010798
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