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Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease
Chronic kidney disease is one of the most important causes of mortality worldwide, but a shortage of nephrology pathologists has led to delays or errors in its diagnosis and treatment. Immunofluorescence (IF) images of patients with IgA nephropathy (IgAN), membranous nephropathy (MN), diabetic nephr...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535636/ https://www.ncbi.nlm.nih.gov/pubmed/34682567 http://dx.doi.org/10.3390/ijerph182010798 |
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author | Pan, Sai Fu, Yibing Chen, Pu Liu, Jiaona Liu, Weicen Wang, Xiaofei Cai, Guangyan Yin, Zhong Wu, Jie Tang, Li Wang, Yong Duan, Shuwei Dai, Ning Jiang, Lai Xu, Mai Chen, Xiangmei |
author_facet | Pan, Sai Fu, Yibing Chen, Pu Liu, Jiaona Liu, Weicen Wang, Xiaofei Cai, Guangyan Yin, Zhong Wu, Jie Tang, Li Wang, Yong Duan, Shuwei Dai, Ning Jiang, Lai Xu, Mai Chen, Xiangmei |
author_sort | Pan, Sai |
collection | PubMed |
description | Chronic kidney disease is one of the most important causes of mortality worldwide, but a shortage of nephrology pathologists has led to delays or errors in its diagnosis and treatment. Immunofluorescence (IF) images of patients with IgA nephropathy (IgAN), membranous nephropathy (MN), diabetic nephropathy (DN), and lupus nephritis (LN) were obtained from the General Hospital of Chinese PLA. The data were divided into training and test data. To simulate the inaccurate focus of the fluorescence microscope, the Gaussian method was employed to blur the IF images. We proposed a novel multi-task learning (MTL) method for image quality assessment, de-blurring, and disease classification tasks. A total of 1608 patients’ IF images were included—1289 in the training set and 319 in the test set. For non-blurred IF images, the classification accuracy of the test set was 0.97, with an AUC of 1.000. For blurred IF images, the proposed MTL method had a higher accuracy (0.94 vs. 0.93, p < 0.01) and higher AUC (0.993 vs. 0.986) than the common MTL method. The novel MTL method not only diagnosed four types of kidney diseases through blurred IF images but also showed good performance in two auxiliary tasks: image quality assessment and de-blurring. |
format | Online Article Text |
id | pubmed-8535636 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-85356362021-10-23 Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease Pan, Sai Fu, Yibing Chen, Pu Liu, Jiaona Liu, Weicen Wang, Xiaofei Cai, Guangyan Yin, Zhong Wu, Jie Tang, Li Wang, Yong Duan, Shuwei Dai, Ning Jiang, Lai Xu, Mai Chen, Xiangmei Int J Environ Res Public Health Article Chronic kidney disease is one of the most important causes of mortality worldwide, but a shortage of nephrology pathologists has led to delays or errors in its diagnosis and treatment. Immunofluorescence (IF) images of patients with IgA nephropathy (IgAN), membranous nephropathy (MN), diabetic nephropathy (DN), and lupus nephritis (LN) were obtained from the General Hospital of Chinese PLA. The data were divided into training and test data. To simulate the inaccurate focus of the fluorescence microscope, the Gaussian method was employed to blur the IF images. We proposed a novel multi-task learning (MTL) method for image quality assessment, de-blurring, and disease classification tasks. A total of 1608 patients’ IF images were included—1289 in the training set and 319 in the test set. For non-blurred IF images, the classification accuracy of the test set was 0.97, with an AUC of 1.000. For blurred IF images, the proposed MTL method had a higher accuracy (0.94 vs. 0.93, p < 0.01) and higher AUC (0.993 vs. 0.986) than the common MTL method. The novel MTL method not only diagnosed four types of kidney diseases through blurred IF images but also showed good performance in two auxiliary tasks: image quality assessment and de-blurring. MDPI 2021-10-15 /pmc/articles/PMC8535636/ /pubmed/34682567 http://dx.doi.org/10.3390/ijerph182010798 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Pan, Sai Fu, Yibing Chen, Pu Liu, Jiaona Liu, Weicen Wang, Xiaofei Cai, Guangyan Yin, Zhong Wu, Jie Tang, Li Wang, Yong Duan, Shuwei Dai, Ning Jiang, Lai Xu, Mai Chen, Xiangmei Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease |
title | Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease |
title_full | Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease |
title_fullStr | Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease |
title_full_unstemmed | Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease |
title_short | Multi-Task Learning-Based Immunofluorescence Classification of Kidney Disease |
title_sort | multi-task learning-based immunofluorescence classification of kidney disease |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535636/ https://www.ncbi.nlm.nih.gov/pubmed/34682567 http://dx.doi.org/10.3390/ijerph182010798 |
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