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Catalogue for Transmission Genetics in Arabs (CTGA) Database: Analysing Lebanese Data on Genetic Disorders

Lebanon has a high annual incidence of birth defects at 63 per 1000 live births, most of which are due to genetic factors. The Catalogue for Transmission Genetics in Arabs (CTGA) database, currently holds data on 642 genetic diseases and 676 related genes, described in Lebanese subjects. A subset of...

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Autores principales: Bizzari, Sami, Nair, Pratibha, Deepthi, Asha, Hana, Sayeeda, Al-Ali, Mahmoud Taleb, Megarbané, André, El-Hayek, Stephany
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535931/
https://www.ncbi.nlm.nih.gov/pubmed/34680914
http://dx.doi.org/10.3390/genes12101518
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author Bizzari, Sami
Nair, Pratibha
Deepthi, Asha
Hana, Sayeeda
Al-Ali, Mahmoud Taleb
Megarbané, André
El-Hayek, Stephany
author_facet Bizzari, Sami
Nair, Pratibha
Deepthi, Asha
Hana, Sayeeda
Al-Ali, Mahmoud Taleb
Megarbané, André
El-Hayek, Stephany
author_sort Bizzari, Sami
collection PubMed
description Lebanon has a high annual incidence of birth defects at 63 per 1000 live births, most of which are due to genetic factors. The Catalogue for Transmission Genetics in Arabs (CTGA) database, currently holds data on 642 genetic diseases and 676 related genes, described in Lebanese subjects. A subset of disorders (14/642) has exclusively been described in the Lebanese population, while 24 have only been reported in CTGA and not on OMIM. An analysis of all disorders highlights a preponderance of congenital malformations, deformations and chromosomal abnormalities and demonstrates that 65% of reported disorders follow an autosomal recessive inheritance pattern. In addition, our analysis reveals that at least 58 known genetic disorders were first mapped in Lebanese families. CTGA also hosts 1316 variant records described in Lebanese subjects, 150 of which were not reported on ClinVar or dbSNP. Most variants involved substitutions, followed by deletions, duplications, as well as in-del and insertion variants. This review of genetic data from the CTGA database highlights the need for screening programs, and is, to the best of our knowledge, the most comprehensive report on the status of genetic disorders in Lebanon to date.
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spelling pubmed-85359312021-10-23 Catalogue for Transmission Genetics in Arabs (CTGA) Database: Analysing Lebanese Data on Genetic Disorders Bizzari, Sami Nair, Pratibha Deepthi, Asha Hana, Sayeeda Al-Ali, Mahmoud Taleb Megarbané, André El-Hayek, Stephany Genes (Basel) Review Lebanon has a high annual incidence of birth defects at 63 per 1000 live births, most of which are due to genetic factors. The Catalogue for Transmission Genetics in Arabs (CTGA) database, currently holds data on 642 genetic diseases and 676 related genes, described in Lebanese subjects. A subset of disorders (14/642) has exclusively been described in the Lebanese population, while 24 have only been reported in CTGA and not on OMIM. An analysis of all disorders highlights a preponderance of congenital malformations, deformations and chromosomal abnormalities and demonstrates that 65% of reported disorders follow an autosomal recessive inheritance pattern. In addition, our analysis reveals that at least 58 known genetic disorders were first mapped in Lebanese families. CTGA also hosts 1316 variant records described in Lebanese subjects, 150 of which were not reported on ClinVar or dbSNP. Most variants involved substitutions, followed by deletions, duplications, as well as in-del and insertion variants. This review of genetic data from the CTGA database highlights the need for screening programs, and is, to the best of our knowledge, the most comprehensive report on the status of genetic disorders in Lebanon to date. MDPI 2021-09-27 /pmc/articles/PMC8535931/ /pubmed/34680914 http://dx.doi.org/10.3390/genes12101518 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Bizzari, Sami
Nair, Pratibha
Deepthi, Asha
Hana, Sayeeda
Al-Ali, Mahmoud Taleb
Megarbané, André
El-Hayek, Stephany
Catalogue for Transmission Genetics in Arabs (CTGA) Database: Analysing Lebanese Data on Genetic Disorders
title Catalogue for Transmission Genetics in Arabs (CTGA) Database: Analysing Lebanese Data on Genetic Disorders
title_full Catalogue for Transmission Genetics in Arabs (CTGA) Database: Analysing Lebanese Data on Genetic Disorders
title_fullStr Catalogue for Transmission Genetics in Arabs (CTGA) Database: Analysing Lebanese Data on Genetic Disorders
title_full_unstemmed Catalogue for Transmission Genetics in Arabs (CTGA) Database: Analysing Lebanese Data on Genetic Disorders
title_short Catalogue for Transmission Genetics in Arabs (CTGA) Database: Analysing Lebanese Data on Genetic Disorders
title_sort catalogue for transmission genetics in arabs (ctga) database: analysing lebanese data on genetic disorders
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535931/
https://www.ncbi.nlm.nih.gov/pubmed/34680914
http://dx.doi.org/10.3390/genes12101518
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