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Mitochondrial and Plastid Genomes of the Monoraphid Diatom Schizostauron trachyderma
We provide for the first time the complete plastid and mitochondrial genomes of a monoraphid diatom: Schizostauron trachyderma. The mitogenome is 41,957 bp in size and displays two group II introns in the cox1 gene. The 187,029 bp plastid genome features the typical quadripartite architecture of dia...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8541233/ https://www.ncbi.nlm.nih.gov/pubmed/34681800 http://dx.doi.org/10.3390/ijms222011139 |
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author | Górecka, Ewa Gastineau, Romain Davidovich, Nikolai A. Davidovich, Olga I. Ashworth, Matt P. Sabir, Jamal S. M. Lemieux, Claude Turmel, Monique Witkowski, Andrzej |
author_facet | Górecka, Ewa Gastineau, Romain Davidovich, Nikolai A. Davidovich, Olga I. Ashworth, Matt P. Sabir, Jamal S. M. Lemieux, Claude Turmel, Monique Witkowski, Andrzej |
author_sort | Górecka, Ewa |
collection | PubMed |
description | We provide for the first time the complete plastid and mitochondrial genomes of a monoraphid diatom: Schizostauron trachyderma. The mitogenome is 41,957 bp in size and displays two group II introns in the cox1 gene. The 187,029 bp plastid genome features the typical quadripartite architecture of diatom genomes. It contains a group II intron in the petB gene that overlaps the large single-copy and the inverted repeat region. There is also a group IB4 intron encoding a putative LAGLIDADG homing endonuclease in the rnl gene. The multigene phylogenies conducted provide more evidence of the proximity between S. trachyderma and fistula-bearing species of biraphid diatoms. |
format | Online Article Text |
id | pubmed-8541233 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-85412332021-10-24 Mitochondrial and Plastid Genomes of the Monoraphid Diatom Schizostauron trachyderma Górecka, Ewa Gastineau, Romain Davidovich, Nikolai A. Davidovich, Olga I. Ashworth, Matt P. Sabir, Jamal S. M. Lemieux, Claude Turmel, Monique Witkowski, Andrzej Int J Mol Sci Article We provide for the first time the complete plastid and mitochondrial genomes of a monoraphid diatom: Schizostauron trachyderma. The mitogenome is 41,957 bp in size and displays two group II introns in the cox1 gene. The 187,029 bp plastid genome features the typical quadripartite architecture of diatom genomes. It contains a group II intron in the petB gene that overlaps the large single-copy and the inverted repeat region. There is also a group IB4 intron encoding a putative LAGLIDADG homing endonuclease in the rnl gene. The multigene phylogenies conducted provide more evidence of the proximity between S. trachyderma and fistula-bearing species of biraphid diatoms. MDPI 2021-10-15 /pmc/articles/PMC8541233/ /pubmed/34681800 http://dx.doi.org/10.3390/ijms222011139 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Górecka, Ewa Gastineau, Romain Davidovich, Nikolai A. Davidovich, Olga I. Ashworth, Matt P. Sabir, Jamal S. M. Lemieux, Claude Turmel, Monique Witkowski, Andrzej Mitochondrial and Plastid Genomes of the Monoraphid Diatom Schizostauron trachyderma |
title | Mitochondrial and Plastid Genomes of the Monoraphid Diatom Schizostauron trachyderma |
title_full | Mitochondrial and Plastid Genomes of the Monoraphid Diatom Schizostauron trachyderma |
title_fullStr | Mitochondrial and Plastid Genomes of the Monoraphid Diatom Schizostauron trachyderma |
title_full_unstemmed | Mitochondrial and Plastid Genomes of the Monoraphid Diatom Schizostauron trachyderma |
title_short | Mitochondrial and Plastid Genomes of the Monoraphid Diatom Schizostauron trachyderma |
title_sort | mitochondrial and plastid genomes of the monoraphid diatom schizostauron trachyderma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8541233/ https://www.ncbi.nlm.nih.gov/pubmed/34681800 http://dx.doi.org/10.3390/ijms222011139 |
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