Cargando…

Draft genomes of non-nitrogen-fixing Frankia strains

In this study, we describe the genomes of two novel candidate species of non-nitrogen fixing Frankia that were isolated from the root nodules of Coriaria nepalensis and Alnus glutinosa, genospecies CN and Ag, respectively. Comparative genomic analyses revealed that both genospecies lack genes essent...

Descripción completa

Detalles Bibliográficos
Autores principales: Carlos-Shanley, Camila, Guerra, Trina, Hahn, Dittmar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8542509/
https://www.ncbi.nlm.nih.gov/pubmed/34703504
http://dx.doi.org/10.7150/jgen.65429
_version_ 1784589446409093120
author Carlos-Shanley, Camila
Guerra, Trina
Hahn, Dittmar
author_facet Carlos-Shanley, Camila
Guerra, Trina
Hahn, Dittmar
author_sort Carlos-Shanley, Camila
collection PubMed
description In this study, we describe the genomes of two novel candidate species of non-nitrogen fixing Frankia that were isolated from the root nodules of Coriaria nepalensis and Alnus glutinosa, genospecies CN and Ag, respectively. Comparative genomic analyses revealed that both genospecies lack genes essential for nitrogen-fixation and possess genes involved in the degradation of plant cell walls. Additionally, we found distinct biosynthetic gene clusters in each genospecies. The availability of these genomes will contribute to the study of the taxonomy and evolution of actinorhizal symbioses.
format Online
Article
Text
id pubmed-8542509
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Ivyspring International Publisher
record_format MEDLINE/PubMed
spelling pubmed-85425092021-10-25 Draft genomes of non-nitrogen-fixing Frankia strains Carlos-Shanley, Camila Guerra, Trina Hahn, Dittmar J Genomics Research Paper In this study, we describe the genomes of two novel candidate species of non-nitrogen fixing Frankia that were isolated from the root nodules of Coriaria nepalensis and Alnus glutinosa, genospecies CN and Ag, respectively. Comparative genomic analyses revealed that both genospecies lack genes essential for nitrogen-fixation and possess genes involved in the degradation of plant cell walls. Additionally, we found distinct biosynthetic gene clusters in each genospecies. The availability of these genomes will contribute to the study of the taxonomy and evolution of actinorhizal symbioses. Ivyspring International Publisher 2021-10-22 /pmc/articles/PMC8542509/ /pubmed/34703504 http://dx.doi.org/10.7150/jgen.65429 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Carlos-Shanley, Camila
Guerra, Trina
Hahn, Dittmar
Draft genomes of non-nitrogen-fixing Frankia strains
title Draft genomes of non-nitrogen-fixing Frankia strains
title_full Draft genomes of non-nitrogen-fixing Frankia strains
title_fullStr Draft genomes of non-nitrogen-fixing Frankia strains
title_full_unstemmed Draft genomes of non-nitrogen-fixing Frankia strains
title_short Draft genomes of non-nitrogen-fixing Frankia strains
title_sort draft genomes of non-nitrogen-fixing frankia strains
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8542509/
https://www.ncbi.nlm.nih.gov/pubmed/34703504
http://dx.doi.org/10.7150/jgen.65429
work_keys_str_mv AT carlosshanleycamila draftgenomesofnonnitrogenfixingfrankiastrains
AT guerratrina draftgenomesofnonnitrogenfixingfrankiastrains
AT hahndittmar draftgenomesofnonnitrogenfixingfrankiastrains