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An Encoder–Decoder-Based Method for Segmentation of COVID-19 Lung Infection in CT Images

The novelty of the COVID-19 Disease and the speed of spread, created colossal chaotic, impulse all the worldwide researchers to exploit all resources and capabilities to understand and analyze characteristics of the coronavirus in terms of spread ways and virus incubation time. For that, the existin...

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Autores principales: Elharrouss, Omar, Subramanian, Nandhini, Al-Maadeed, Somaya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Singapore 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8543772/
https://www.ncbi.nlm.nih.gov/pubmed/34723206
http://dx.doi.org/10.1007/s42979-021-00874-4
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author Elharrouss, Omar
Subramanian, Nandhini
Al-Maadeed, Somaya
author_facet Elharrouss, Omar
Subramanian, Nandhini
Al-Maadeed, Somaya
author_sort Elharrouss, Omar
collection PubMed
description The novelty of the COVID-19 Disease and the speed of spread, created colossal chaotic, impulse all the worldwide researchers to exploit all resources and capabilities to understand and analyze characteristics of the coronavirus in terms of spread ways and virus incubation time. For that, the existing medical features such as CT-scan and X-ray images are used. For example, CT-scan images can be used for the detection of lung infection. However, the quality of these images and infection characteristics limit the effectiveness of these features. Using artificial intelligence (AI) tools and computer vision algorithms, the accuracy of detection can be more accurate and can help to overcome these issues. In this paper, we propose a multi-task deep-learning-based method for lung infection segmentation on CT-scan images. Our proposed method starts by segmenting the lung regions that may be infected. Then, segmenting the infections in these regions. In addition, to perform a multi-class segmentation the proposed model is trained using the two-stream inputs. The multi-task learning used in this paper allows us to overcome the shortage of labeled data. In addition, the multi-input stream allows the model to learn from many features that can improve the results. To evaluate the proposed method, many metrics have been used including Sorensen–Dice similarity, Sensitivity, Specificity, Precision, and MAE metrics. As a result of experiments, the proposed method can segment lung infections with high performance even with the shortage of data and labeled images. In addition, comparing with the state-of-the-art method our method achieves good performance results. For example, the proposed method reached 78..6% for Dice, 71.1% for Sensitivity metric, 99.3% for Specificity 85.6% for Precision, and 0.062 for Mean Average Error metric, which demonstrates the effectiveness of the proposed method for lung infection segmentation.
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spelling pubmed-85437722021-10-26 An Encoder–Decoder-Based Method for Segmentation of COVID-19 Lung Infection in CT Images Elharrouss, Omar Subramanian, Nandhini Al-Maadeed, Somaya SN Comput Sci Original Research The novelty of the COVID-19 Disease and the speed of spread, created colossal chaotic, impulse all the worldwide researchers to exploit all resources and capabilities to understand and analyze characteristics of the coronavirus in terms of spread ways and virus incubation time. For that, the existing medical features such as CT-scan and X-ray images are used. For example, CT-scan images can be used for the detection of lung infection. However, the quality of these images and infection characteristics limit the effectiveness of these features. Using artificial intelligence (AI) tools and computer vision algorithms, the accuracy of detection can be more accurate and can help to overcome these issues. In this paper, we propose a multi-task deep-learning-based method for lung infection segmentation on CT-scan images. Our proposed method starts by segmenting the lung regions that may be infected. Then, segmenting the infections in these regions. In addition, to perform a multi-class segmentation the proposed model is trained using the two-stream inputs. The multi-task learning used in this paper allows us to overcome the shortage of labeled data. In addition, the multi-input stream allows the model to learn from many features that can improve the results. To evaluate the proposed method, many metrics have been used including Sorensen–Dice similarity, Sensitivity, Specificity, Precision, and MAE metrics. As a result of experiments, the proposed method can segment lung infections with high performance even with the shortage of data and labeled images. In addition, comparing with the state-of-the-art method our method achieves good performance results. For example, the proposed method reached 78..6% for Dice, 71.1% for Sensitivity metric, 99.3% for Specificity 85.6% for Precision, and 0.062 for Mean Average Error metric, which demonstrates the effectiveness of the proposed method for lung infection segmentation. Springer Singapore 2021-10-25 2022 /pmc/articles/PMC8543772/ /pubmed/34723206 http://dx.doi.org/10.1007/s42979-021-00874-4 Text en © The Author(s), under exclusive licence to Springer Nature Singapore Pte Ltd 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Research
Elharrouss, Omar
Subramanian, Nandhini
Al-Maadeed, Somaya
An Encoder–Decoder-Based Method for Segmentation of COVID-19 Lung Infection in CT Images
title An Encoder–Decoder-Based Method for Segmentation of COVID-19 Lung Infection in CT Images
title_full An Encoder–Decoder-Based Method for Segmentation of COVID-19 Lung Infection in CT Images
title_fullStr An Encoder–Decoder-Based Method for Segmentation of COVID-19 Lung Infection in CT Images
title_full_unstemmed An Encoder–Decoder-Based Method for Segmentation of COVID-19 Lung Infection in CT Images
title_short An Encoder–Decoder-Based Method for Segmentation of COVID-19 Lung Infection in CT Images
title_sort encoder–decoder-based method for segmentation of covid-19 lung infection in ct images
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8543772/
https://www.ncbi.nlm.nih.gov/pubmed/34723206
http://dx.doi.org/10.1007/s42979-021-00874-4
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