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A novel prognostic signature based on immune-related genes of diffuse large B-cell lymphoma

Diffuse large B-cell lymphoma (DLBCL) presents a great clinical challenge and has a poor prognosis, with immune-related genes playing a crucial role. We aimed to develop an immune-related prognostic signature for improving prognosis prediction in DLBCL. Samples from the GSE31312 dataset were randoml...

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Autores principales: Wu, Zizheng, Guan, Qingpei, Han, Xue, Liu, Xianming, Li, Lanfang, Qiu, Lihua, Qian, Zhengzi, Zhou, Shiyong, Wang, Xianhuo, Zhang, Huilai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544299/
https://www.ncbi.nlm.nih.gov/pubmed/34610582
http://dx.doi.org/10.18632/aging.203587
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author Wu, Zizheng
Guan, Qingpei
Han, Xue
Liu, Xianming
Li, Lanfang
Qiu, Lihua
Qian, Zhengzi
Zhou, Shiyong
Wang, Xianhuo
Zhang, Huilai
author_facet Wu, Zizheng
Guan, Qingpei
Han, Xue
Liu, Xianming
Li, Lanfang
Qiu, Lihua
Qian, Zhengzi
Zhou, Shiyong
Wang, Xianhuo
Zhang, Huilai
author_sort Wu, Zizheng
collection PubMed
description Diffuse large B-cell lymphoma (DLBCL) presents a great clinical challenge and has a poor prognosis, with immune-related genes playing a crucial role. We aimed to develop an immune-related prognostic signature for improving prognosis prediction in DLBCL. Samples from the GSE31312 dataset were randomly allocated to discovery and internal validation cohorts. Univariate Cox, random forest, LASSO regression and multivariate Cox analyses were utilized to develop a prognostic signature, which was verified in the internal validation cohort, entire validation cohort and external validation cohort (GSE10846). The tumor microenvironment was investigated using the CIBERSORT and ESTIMATE tools. Gene set enrichment analysis (GSEA) was further applied to analyze the entire GSE31312 cohort. We identified four immune-related genes (CD48, IL1RL, PSDM3, RXFP3) significantly associated with overall survival. Based on discovery and validation cohort analyses, this four-gene signature could classify patients into high- and low-risk groups, with significantly different prognoses. Activated memory CD4 T cells and activated dendritic cells were significantly decreased in the high-risk group, and these patients had lower immune scores. GSEA revealed enrichment of signaling pathways, such as T cell receptor, antigen receptor-mediated, antigen processing and presentation of peptide antigen via MHC class I, in the low-risk group. In conclusion, a robust signature based on four immune-related genes was successfully constructed for predicting prognosis in DLBCL patients.
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spelling pubmed-85442992021-10-26 A novel prognostic signature based on immune-related genes of diffuse large B-cell lymphoma Wu, Zizheng Guan, Qingpei Han, Xue Liu, Xianming Li, Lanfang Qiu, Lihua Qian, Zhengzi Zhou, Shiyong Wang, Xianhuo Zhang, Huilai Aging (Albany NY) Research Paper Diffuse large B-cell lymphoma (DLBCL) presents a great clinical challenge and has a poor prognosis, with immune-related genes playing a crucial role. We aimed to develop an immune-related prognostic signature for improving prognosis prediction in DLBCL. Samples from the GSE31312 dataset were randomly allocated to discovery and internal validation cohorts. Univariate Cox, random forest, LASSO regression and multivariate Cox analyses were utilized to develop a prognostic signature, which was verified in the internal validation cohort, entire validation cohort and external validation cohort (GSE10846). The tumor microenvironment was investigated using the CIBERSORT and ESTIMATE tools. Gene set enrichment analysis (GSEA) was further applied to analyze the entire GSE31312 cohort. We identified four immune-related genes (CD48, IL1RL, PSDM3, RXFP3) significantly associated with overall survival. Based on discovery and validation cohort analyses, this four-gene signature could classify patients into high- and low-risk groups, with significantly different prognoses. Activated memory CD4 T cells and activated dendritic cells were significantly decreased in the high-risk group, and these patients had lower immune scores. GSEA revealed enrichment of signaling pathways, such as T cell receptor, antigen receptor-mediated, antigen processing and presentation of peptide antigen via MHC class I, in the low-risk group. In conclusion, a robust signature based on four immune-related genes was successfully constructed for predicting prognosis in DLBCL patients. Impact Journals 2021-10-05 /pmc/articles/PMC8544299/ /pubmed/34610582 http://dx.doi.org/10.18632/aging.203587 Text en Copyright: © 2021 Wu et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Wu, Zizheng
Guan, Qingpei
Han, Xue
Liu, Xianming
Li, Lanfang
Qiu, Lihua
Qian, Zhengzi
Zhou, Shiyong
Wang, Xianhuo
Zhang, Huilai
A novel prognostic signature based on immune-related genes of diffuse large B-cell lymphoma
title A novel prognostic signature based on immune-related genes of diffuse large B-cell lymphoma
title_full A novel prognostic signature based on immune-related genes of diffuse large B-cell lymphoma
title_fullStr A novel prognostic signature based on immune-related genes of diffuse large B-cell lymphoma
title_full_unstemmed A novel prognostic signature based on immune-related genes of diffuse large B-cell lymphoma
title_short A novel prognostic signature based on immune-related genes of diffuse large B-cell lymphoma
title_sort novel prognostic signature based on immune-related genes of diffuse large b-cell lymphoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544299/
https://www.ncbi.nlm.nih.gov/pubmed/34610582
http://dx.doi.org/10.18632/aging.203587
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