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Significance of CD8(+) T cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma

Cytotoxic T cells expressing cell surface CD8 played a key role in anti-cancer immunotherapy, including kidney renal clear cell carcinoma (KIRC). Here we set out to comprehensively analyze and evaluate the significance of CD8(+) T cell-related markers for patients with KIRC. We checked immune cell r...

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Autores principales: Tian, Yuan, Wei, Yumei, Liu, Hongmei, Shang, Heli, Xu, Yuedong, Wu, Tong, Liu, Wei, Huang, Alan, Dang, Qi, Sun, Yuping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544304/
https://www.ncbi.nlm.nih.gov/pubmed/34606472
http://dx.doi.org/10.18632/aging.203584
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author Tian, Yuan
Wei, Yumei
Liu, Hongmei
Shang, Heli
Xu, Yuedong
Wu, Tong
Liu, Wei
Huang, Alan
Dang, Qi
Sun, Yuping
author_facet Tian, Yuan
Wei, Yumei
Liu, Hongmei
Shang, Heli
Xu, Yuedong
Wu, Tong
Liu, Wei
Huang, Alan
Dang, Qi
Sun, Yuping
author_sort Tian, Yuan
collection PubMed
description Cytotoxic T cells expressing cell surface CD8 played a key role in anti-cancer immunotherapy, including kidney renal clear cell carcinoma (KIRC). Here we set out to comprehensively analyze and evaluate the significance of CD8(+) T cell-related markers for patients with KIRC. We checked immune cell response in KIRC and identified cell type-specific markers and related pathways in the tumor-infiltrating CD8(+) T (TIL-CD8T) cells. We used these markers to explore their prognostic signatures in TIL-CD8(+) T by evaluating their prognostic efficacy and group differences at various levels. Through pan-cancer analysis, 12 of 63 up-regulated and 162 of 396 down-regulated genes in CD8+ T cells were found to be significantly correlated with the survival prognosis. Based on our highly integrated multi-platform analyses across multiple datasets, we constructed a 6-gene risk scoring model specific to TIL-CD8T. In this model, high TIL-CD8 sig score was corresponding to a higher incidence frequency of copy number variation and drug sensitivity to sorafenib. Moreover, the prognosis of patients with the same or similar immune checkpoint gene levels could be distinguished from each other by TIL-CD8 sig score.
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spelling pubmed-85443042021-10-26 Significance of CD8(+) T cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma Tian, Yuan Wei, Yumei Liu, Hongmei Shang, Heli Xu, Yuedong Wu, Tong Liu, Wei Huang, Alan Dang, Qi Sun, Yuping Aging (Albany NY) Research Paper Cytotoxic T cells expressing cell surface CD8 played a key role in anti-cancer immunotherapy, including kidney renal clear cell carcinoma (KIRC). Here we set out to comprehensively analyze and evaluate the significance of CD8(+) T cell-related markers for patients with KIRC. We checked immune cell response in KIRC and identified cell type-specific markers and related pathways in the tumor-infiltrating CD8(+) T (TIL-CD8T) cells. We used these markers to explore their prognostic signatures in TIL-CD8(+) T by evaluating their prognostic efficacy and group differences at various levels. Through pan-cancer analysis, 12 of 63 up-regulated and 162 of 396 down-regulated genes in CD8+ T cells were found to be significantly correlated with the survival prognosis. Based on our highly integrated multi-platform analyses across multiple datasets, we constructed a 6-gene risk scoring model specific to TIL-CD8T. In this model, high TIL-CD8 sig score was corresponding to a higher incidence frequency of copy number variation and drug sensitivity to sorafenib. Moreover, the prognosis of patients with the same or similar immune checkpoint gene levels could be distinguished from each other by TIL-CD8 sig score. Impact Journals 2021-10-04 /pmc/articles/PMC8544304/ /pubmed/34606472 http://dx.doi.org/10.18632/aging.203584 Text en Copyright: © 2021 Tian et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Tian, Yuan
Wei, Yumei
Liu, Hongmei
Shang, Heli
Xu, Yuedong
Wu, Tong
Liu, Wei
Huang, Alan
Dang, Qi
Sun, Yuping
Significance of CD8(+) T cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma
title Significance of CD8(+) T cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma
title_full Significance of CD8(+) T cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma
title_fullStr Significance of CD8(+) T cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma
title_full_unstemmed Significance of CD8(+) T cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma
title_short Significance of CD8(+) T cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma
title_sort significance of cd8(+) t cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544304/
https://www.ncbi.nlm.nih.gov/pubmed/34606472
http://dx.doi.org/10.18632/aging.203584
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