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Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing
Expansion of the newborn disorder panel requires the incorporation of new testing modalities. This is especially true for disorders lacking robust biomarkers for detection in primary screening methods and for disorders requiring genotyping or sequencing as a second-tier and/or diagnostic test. In th...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544371/ https://www.ncbi.nlm.nih.gov/pubmed/34698050 http://dx.doi.org/10.3390/ijns7040063 |
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author | Ruiz-Schultz, Nicole Asay, Bryce Rohrwasser, Andreas |
author_facet | Ruiz-Schultz, Nicole Asay, Bryce Rohrwasser, Andreas |
author_sort | Ruiz-Schultz, Nicole |
collection | PubMed |
description | Expansion of the newborn disorder panel requires the incorporation of new testing modalities. This is especially true for disorders lacking robust biomarkers for detection in primary screening methods and for disorders requiring genotyping or sequencing as a second-tier and/or diagnostic test. In this commentary, we discuss how next-generation sequencing (NGS) methods can be used as a secondary testing method in NBS. Additionally, we elaborate on the importance of genomic variant repositories for the annotation and interpretation of variants. Barriers to the incorporation of NGS and bioinformatics within NBS are discussed, and ideas for a regional bioinformatics model and shared variant repository are presented as potential solutions. |
format | Online Article Text |
id | pubmed-8544371 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-85443712021-10-26 Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing Ruiz-Schultz, Nicole Asay, Bryce Rohrwasser, Andreas Int J Neonatal Screen Commentary Expansion of the newborn disorder panel requires the incorporation of new testing modalities. This is especially true for disorders lacking robust biomarkers for detection in primary screening methods and for disorders requiring genotyping or sequencing as a second-tier and/or diagnostic test. In this commentary, we discuss how next-generation sequencing (NGS) methods can be used as a secondary testing method in NBS. Additionally, we elaborate on the importance of genomic variant repositories for the annotation and interpretation of variants. Barriers to the incorporation of NGS and bioinformatics within NBS are discussed, and ideas for a regional bioinformatics model and shared variant repository are presented as potential solutions. MDPI 2021-09-30 /pmc/articles/PMC8544371/ /pubmed/34698050 http://dx.doi.org/10.3390/ijns7040063 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Commentary Ruiz-Schultz, Nicole Asay, Bryce Rohrwasser, Andreas Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing |
title | Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing |
title_full | Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing |
title_fullStr | Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing |
title_full_unstemmed | Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing |
title_short | Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing |
title_sort | scalable newborn screening solutions: bioinformatics and next-generation sequencing |
topic | Commentary |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544371/ https://www.ncbi.nlm.nih.gov/pubmed/34698050 http://dx.doi.org/10.3390/ijns7040063 |
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