Cargando…

Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing

Expansion of the newborn disorder panel requires the incorporation of new testing modalities. This is especially true for disorders lacking robust biomarkers for detection in primary screening methods and for disorders requiring genotyping or sequencing as a second-tier and/or diagnostic test. In th...

Descripción completa

Detalles Bibliográficos
Autores principales: Ruiz-Schultz, Nicole, Asay, Bryce, Rohrwasser, Andreas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544371/
https://www.ncbi.nlm.nih.gov/pubmed/34698050
http://dx.doi.org/10.3390/ijns7040063
_version_ 1784589802590437376
author Ruiz-Schultz, Nicole
Asay, Bryce
Rohrwasser, Andreas
author_facet Ruiz-Schultz, Nicole
Asay, Bryce
Rohrwasser, Andreas
author_sort Ruiz-Schultz, Nicole
collection PubMed
description Expansion of the newborn disorder panel requires the incorporation of new testing modalities. This is especially true for disorders lacking robust biomarkers for detection in primary screening methods and for disorders requiring genotyping or sequencing as a second-tier and/or diagnostic test. In this commentary, we discuss how next-generation sequencing (NGS) methods can be used as a secondary testing method in NBS. Additionally, we elaborate on the importance of genomic variant repositories for the annotation and interpretation of variants. Barriers to the incorporation of NGS and bioinformatics within NBS are discussed, and ideas for a regional bioinformatics model and shared variant repository are presented as potential solutions.
format Online
Article
Text
id pubmed-8544371
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-85443712021-10-26 Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing Ruiz-Schultz, Nicole Asay, Bryce Rohrwasser, Andreas Int J Neonatal Screen Commentary Expansion of the newborn disorder panel requires the incorporation of new testing modalities. This is especially true for disorders lacking robust biomarkers for detection in primary screening methods and for disorders requiring genotyping or sequencing as a second-tier and/or diagnostic test. In this commentary, we discuss how next-generation sequencing (NGS) methods can be used as a secondary testing method in NBS. Additionally, we elaborate on the importance of genomic variant repositories for the annotation and interpretation of variants. Barriers to the incorporation of NGS and bioinformatics within NBS are discussed, and ideas for a regional bioinformatics model and shared variant repository are presented as potential solutions. MDPI 2021-09-30 /pmc/articles/PMC8544371/ /pubmed/34698050 http://dx.doi.org/10.3390/ijns7040063 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Commentary
Ruiz-Schultz, Nicole
Asay, Bryce
Rohrwasser, Andreas
Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing
title Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing
title_full Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing
title_fullStr Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing
title_full_unstemmed Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing
title_short Scalable Newborn Screening Solutions: Bioinformatics and Next-Generation Sequencing
title_sort scalable newborn screening solutions: bioinformatics and next-generation sequencing
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544371/
https://www.ncbi.nlm.nih.gov/pubmed/34698050
http://dx.doi.org/10.3390/ijns7040063
work_keys_str_mv AT ruizschultznicole scalablenewbornscreeningsolutionsbioinformaticsandnextgenerationsequencing
AT asaybryce scalablenewbornscreeningsolutionsbioinformaticsandnextgenerationsequencing
AT rohrwasserandreas scalablenewbornscreeningsolutionsbioinformaticsandnextgenerationsequencing