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A stomata classification and detection system in microscope images of maize cultivars

Plant stomata are essential structures (pores) that control the exchange of gases between plant leaves and the atmosphere, and also they influence plant adaptation to climate through photosynthesis and transpiration stream. Many works in literature aim for a better understanding of these structures...

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Autores principales: Aono, Alexandre H., Nagai, James S., Dickel, Gabriella da S. M., Marinho, Rafaela C., de Oliveira, Paulo E. A. M., Papa, João P., Faria, Fabio A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544852/
https://www.ncbi.nlm.nih.gov/pubmed/34695146
http://dx.doi.org/10.1371/journal.pone.0258679
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author Aono, Alexandre H.
Nagai, James S.
Dickel, Gabriella da S. M.
Marinho, Rafaela C.
de Oliveira, Paulo E. A. M.
Papa, João P.
Faria, Fabio A.
author_facet Aono, Alexandre H.
Nagai, James S.
Dickel, Gabriella da S. M.
Marinho, Rafaela C.
de Oliveira, Paulo E. A. M.
Papa, João P.
Faria, Fabio A.
author_sort Aono, Alexandre H.
collection PubMed
description Plant stomata are essential structures (pores) that control the exchange of gases between plant leaves and the atmosphere, and also they influence plant adaptation to climate through photosynthesis and transpiration stream. Many works in literature aim for a better understanding of these structures and their role in the evolution process and the behavior of plants. Although stomata studies in dicots species have advanced considerably in the past years, even there is not much knowledge about the stomata of cereal grasses. Due to the high morphological variation of stomata traits intra- and inter-species, detecting and classifying stomata automatically becomes challenging. For this reason, in this work, we propose a new system for automatic stomata classification and detection in microscope images for maize cultivars based on transfer learning strategy of different deep convolution neural netwoks (DCNN). Our performed experiments show that our system achieves an approximated accuracy of 97.1% in identifying stomata regions using classifiers based on deep learning features, which figures out as a nearly perfect classification system. As the stomata are responsible for several plant functionalities, this work represents an important advance for maize research, providing an accurate system in replacing the current manual task of categorizing these pores on microscope images. Furthermore, this system can also be a reference for studies using images from different cereal grasses.
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spelling pubmed-85448522021-10-26 A stomata classification and detection system in microscope images of maize cultivars Aono, Alexandre H. Nagai, James S. Dickel, Gabriella da S. M. Marinho, Rafaela C. de Oliveira, Paulo E. A. M. Papa, João P. Faria, Fabio A. PLoS One Research Article Plant stomata are essential structures (pores) that control the exchange of gases between plant leaves and the atmosphere, and also they influence plant adaptation to climate through photosynthesis and transpiration stream. Many works in literature aim for a better understanding of these structures and their role in the evolution process and the behavior of plants. Although stomata studies in dicots species have advanced considerably in the past years, even there is not much knowledge about the stomata of cereal grasses. Due to the high morphological variation of stomata traits intra- and inter-species, detecting and classifying stomata automatically becomes challenging. For this reason, in this work, we propose a new system for automatic stomata classification and detection in microscope images for maize cultivars based on transfer learning strategy of different deep convolution neural netwoks (DCNN). Our performed experiments show that our system achieves an approximated accuracy of 97.1% in identifying stomata regions using classifiers based on deep learning features, which figures out as a nearly perfect classification system. As the stomata are responsible for several plant functionalities, this work represents an important advance for maize research, providing an accurate system in replacing the current manual task of categorizing these pores on microscope images. Furthermore, this system can also be a reference for studies using images from different cereal grasses. Public Library of Science 2021-10-25 /pmc/articles/PMC8544852/ /pubmed/34695146 http://dx.doi.org/10.1371/journal.pone.0258679 Text en © 2021 Aono et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Aono, Alexandre H.
Nagai, James S.
Dickel, Gabriella da S. M.
Marinho, Rafaela C.
de Oliveira, Paulo E. A. M.
Papa, João P.
Faria, Fabio A.
A stomata classification and detection system in microscope images of maize cultivars
title A stomata classification and detection system in microscope images of maize cultivars
title_full A stomata classification and detection system in microscope images of maize cultivars
title_fullStr A stomata classification and detection system in microscope images of maize cultivars
title_full_unstemmed A stomata classification and detection system in microscope images of maize cultivars
title_short A stomata classification and detection system in microscope images of maize cultivars
title_sort stomata classification and detection system in microscope images of maize cultivars
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544852/
https://www.ncbi.nlm.nih.gov/pubmed/34695146
http://dx.doi.org/10.1371/journal.pone.0258679
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