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A stomata classification and detection system in microscope images of maize cultivars
Plant stomata are essential structures (pores) that control the exchange of gases between plant leaves and the atmosphere, and also they influence plant adaptation to climate through photosynthesis and transpiration stream. Many works in literature aim for a better understanding of these structures...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544852/ https://www.ncbi.nlm.nih.gov/pubmed/34695146 http://dx.doi.org/10.1371/journal.pone.0258679 |
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author | Aono, Alexandre H. Nagai, James S. Dickel, Gabriella da S. M. Marinho, Rafaela C. de Oliveira, Paulo E. A. M. Papa, João P. Faria, Fabio A. |
author_facet | Aono, Alexandre H. Nagai, James S. Dickel, Gabriella da S. M. Marinho, Rafaela C. de Oliveira, Paulo E. A. M. Papa, João P. Faria, Fabio A. |
author_sort | Aono, Alexandre H. |
collection | PubMed |
description | Plant stomata are essential structures (pores) that control the exchange of gases between plant leaves and the atmosphere, and also they influence plant adaptation to climate through photosynthesis and transpiration stream. Many works in literature aim for a better understanding of these structures and their role in the evolution process and the behavior of plants. Although stomata studies in dicots species have advanced considerably in the past years, even there is not much knowledge about the stomata of cereal grasses. Due to the high morphological variation of stomata traits intra- and inter-species, detecting and classifying stomata automatically becomes challenging. For this reason, in this work, we propose a new system for automatic stomata classification and detection in microscope images for maize cultivars based on transfer learning strategy of different deep convolution neural netwoks (DCNN). Our performed experiments show that our system achieves an approximated accuracy of 97.1% in identifying stomata regions using classifiers based on deep learning features, which figures out as a nearly perfect classification system. As the stomata are responsible for several plant functionalities, this work represents an important advance for maize research, providing an accurate system in replacing the current manual task of categorizing these pores on microscope images. Furthermore, this system can also be a reference for studies using images from different cereal grasses. |
format | Online Article Text |
id | pubmed-8544852 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-85448522021-10-26 A stomata classification and detection system in microscope images of maize cultivars Aono, Alexandre H. Nagai, James S. Dickel, Gabriella da S. M. Marinho, Rafaela C. de Oliveira, Paulo E. A. M. Papa, João P. Faria, Fabio A. PLoS One Research Article Plant stomata are essential structures (pores) that control the exchange of gases between plant leaves and the atmosphere, and also they influence plant adaptation to climate through photosynthesis and transpiration stream. Many works in literature aim for a better understanding of these structures and their role in the evolution process and the behavior of plants. Although stomata studies in dicots species have advanced considerably in the past years, even there is not much knowledge about the stomata of cereal grasses. Due to the high morphological variation of stomata traits intra- and inter-species, detecting and classifying stomata automatically becomes challenging. For this reason, in this work, we propose a new system for automatic stomata classification and detection in microscope images for maize cultivars based on transfer learning strategy of different deep convolution neural netwoks (DCNN). Our performed experiments show that our system achieves an approximated accuracy of 97.1% in identifying stomata regions using classifiers based on deep learning features, which figures out as a nearly perfect classification system. As the stomata are responsible for several plant functionalities, this work represents an important advance for maize research, providing an accurate system in replacing the current manual task of categorizing these pores on microscope images. Furthermore, this system can also be a reference for studies using images from different cereal grasses. Public Library of Science 2021-10-25 /pmc/articles/PMC8544852/ /pubmed/34695146 http://dx.doi.org/10.1371/journal.pone.0258679 Text en © 2021 Aono et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Aono, Alexandre H. Nagai, James S. Dickel, Gabriella da S. M. Marinho, Rafaela C. de Oliveira, Paulo E. A. M. Papa, João P. Faria, Fabio A. A stomata classification and detection system in microscope images of maize cultivars |
title | A stomata classification and detection system in microscope images of maize cultivars |
title_full | A stomata classification and detection system in microscope images of maize cultivars |
title_fullStr | A stomata classification and detection system in microscope images of maize cultivars |
title_full_unstemmed | A stomata classification and detection system in microscope images of maize cultivars |
title_short | A stomata classification and detection system in microscope images of maize cultivars |
title_sort | stomata classification and detection system in microscope images of maize cultivars |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8544852/ https://www.ncbi.nlm.nih.gov/pubmed/34695146 http://dx.doi.org/10.1371/journal.pone.0258679 |
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