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Attention-RefNet: Interactive Attention Refinement Network for Infected Area Segmentation of COVID-19

COVID-19 pneumonia is a disease that causes an existential health crisis in many people by directly affecting and damaging lung cells. The segmentation of infected areas from computed tomography (CT) images can be used to assist and provide useful information for COVID-19 diagnosis. Although several...

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Formato: Online Artículo Texto
Lenguaje:English
Publicado: IEEE 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8545076/
https://www.ncbi.nlm.nih.gov/pubmed/34033549
http://dx.doi.org/10.1109/JBHI.2021.3082527
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description COVID-19 pneumonia is a disease that causes an existential health crisis in many people by directly affecting and damaging lung cells. The segmentation of infected areas from computed tomography (CT) images can be used to assist and provide useful information for COVID-19 diagnosis. Although several deep learning-based segmentation methods have been proposed for COVID-19 segmentation and have achieved state-of-the-art results, the segmentation accuracy is still not high enough (approximately 85%) due to the variations of COVID-19 infected areas (such as shape and size variations) and the similarities between COVID-19 and non-COVID-infected areas. To improve the segmentation accuracy of COVID-19 infected areas, we propose an interactive attention refinement network (Attention RefNet). The interactive attention refinement network can be connected with any segmentation network and trained with the segmentation network in an end-to-end fashion. We propose a skip connection attention module to improve the important features in both segmentation and refinement networks and a seed point module to enhance the important seeds (positions) for interactive refinement. The effectiveness of the proposed method was demonstrated on public datasets (COVID-19CTSeg and MICCAI) and our private multicenter dataset. The segmentation accuracy was improved to more than 90%. We also confirmed the generalizability of the proposed network on our multicenter dataset. The proposed method can still achieve high segmentation accuracy.
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spelling pubmed-85450762022-06-29 Attention-RefNet: Interactive Attention Refinement Network for Infected Area Segmentation of COVID-19 IEEE J Biomed Health Inform Article COVID-19 pneumonia is a disease that causes an existential health crisis in many people by directly affecting and damaging lung cells. The segmentation of infected areas from computed tomography (CT) images can be used to assist and provide useful information for COVID-19 diagnosis. Although several deep learning-based segmentation methods have been proposed for COVID-19 segmentation and have achieved state-of-the-art results, the segmentation accuracy is still not high enough (approximately 85%) due to the variations of COVID-19 infected areas (such as shape and size variations) and the similarities between COVID-19 and non-COVID-infected areas. To improve the segmentation accuracy of COVID-19 infected areas, we propose an interactive attention refinement network (Attention RefNet). The interactive attention refinement network can be connected with any segmentation network and trained with the segmentation network in an end-to-end fashion. We propose a skip connection attention module to improve the important features in both segmentation and refinement networks and a seed point module to enhance the important seeds (positions) for interactive refinement. The effectiveness of the proposed method was demonstrated on public datasets (COVID-19CTSeg and MICCAI) and our private multicenter dataset. The segmentation accuracy was improved to more than 90%. We also confirmed the generalizability of the proposed network on our multicenter dataset. The proposed method can still achieve high segmentation accuracy. IEEE 2021-05-25 /pmc/articles/PMC8545076/ /pubmed/34033549 http://dx.doi.org/10.1109/JBHI.2021.3082527 Text en This article is free to access and download, along with rights for full text and data mining, re-use and analysis.
spellingShingle Article
Attention-RefNet: Interactive Attention Refinement Network for Infected Area Segmentation of COVID-19
title Attention-RefNet: Interactive Attention Refinement Network for Infected Area Segmentation of COVID-19
title_full Attention-RefNet: Interactive Attention Refinement Network for Infected Area Segmentation of COVID-19
title_fullStr Attention-RefNet: Interactive Attention Refinement Network for Infected Area Segmentation of COVID-19
title_full_unstemmed Attention-RefNet: Interactive Attention Refinement Network for Infected Area Segmentation of COVID-19
title_short Attention-RefNet: Interactive Attention Refinement Network for Infected Area Segmentation of COVID-19
title_sort attention-refnet: interactive attention refinement network for infected area segmentation of covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8545076/
https://www.ncbi.nlm.nih.gov/pubmed/34033549
http://dx.doi.org/10.1109/JBHI.2021.3082527
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