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Weakly-Supervised Network for Detection of COVID-19 in Chest CT Scans

Deep Learning-based chest Computed Tomography (CT) analysis has been proven to be effective and efficient for COVID-19 diagnosis. Existing deep learning approaches heavily rely on large labeled data sets, which are difficult to acquire in this pandemic situation. Therefore, weakly-supervised approac...

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Formato: Online Artículo Texto
Lenguaje:English
Publicado: IEEE 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8545309/
https://www.ncbi.nlm.nih.gov/pubmed/34812352
http://dx.doi.org/10.1109/ACCESS.2020.3018498
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collection PubMed
description Deep Learning-based chest Computed Tomography (CT) analysis has been proven to be effective and efficient for COVID-19 diagnosis. Existing deep learning approaches heavily rely on large labeled data sets, which are difficult to acquire in this pandemic situation. Therefore, weakly-supervised approaches are in demand. In this paper, we propose an end-to-end weakly-supervised COVID-19 detection approach, ResNext+, that only requires volume level data labels and can provide slice level prediction. The proposed approach incorporates a lung segmentation mask as well as spatial and channel attention to extract spatial features. Besides, Long Short Term Memory (LSTM) is utilized to acquire the axial dependency of the slices. Moreover, a slice attention module is applied before the final fully connected layer to generate the slice level prediction without additional supervision. An ablation study is conducted to show the efficiency of the attention blocks and the segmentation mask block. Experimental results, obtained from publicly available datasets, show a precision of 81.9% and F1 score of 81.4%. The closest state-of-the-art gives 76.7% precision and 78.8% F1 score. The 5% improvement in precision and 3% in the F1 score demonstrate the effectiveness of the proposed method. It is worth noticing that, applying image enhancement approaches do not improve the performance of the proposed method, sometimes even harm the scores, although the enhanced images have better perceptual quality.
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spelling pubmed-85453092021-11-18 Weakly-Supervised Network for Detection of COVID-19 in Chest CT Scans IEEE Access Computational and Artificial Intelligence Deep Learning-based chest Computed Tomography (CT) analysis has been proven to be effective and efficient for COVID-19 diagnosis. Existing deep learning approaches heavily rely on large labeled data sets, which are difficult to acquire in this pandemic situation. Therefore, weakly-supervised approaches are in demand. In this paper, we propose an end-to-end weakly-supervised COVID-19 detection approach, ResNext+, that only requires volume level data labels and can provide slice level prediction. The proposed approach incorporates a lung segmentation mask as well as spatial and channel attention to extract spatial features. Besides, Long Short Term Memory (LSTM) is utilized to acquire the axial dependency of the slices. Moreover, a slice attention module is applied before the final fully connected layer to generate the slice level prediction without additional supervision. An ablation study is conducted to show the efficiency of the attention blocks and the segmentation mask block. Experimental results, obtained from publicly available datasets, show a precision of 81.9% and F1 score of 81.4%. The closest state-of-the-art gives 76.7% precision and 78.8% F1 score. The 5% improvement in precision and 3% in the F1 score demonstrate the effectiveness of the proposed method. It is worth noticing that, applying image enhancement approaches do not improve the performance of the proposed method, sometimes even harm the scores, although the enhanced images have better perceptual quality. IEEE 2020-08-21 /pmc/articles/PMC8545309/ /pubmed/34812352 http://dx.doi.org/10.1109/ACCESS.2020.3018498 Text en This work is licensed under a Creative Commons Attribution 4.0 License. For more information, see https://creativecommons.org/licenses/by/4.0/ https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 License. For more information, see https://creativecommons.org/licenses/by/4.0/
spellingShingle Computational and Artificial Intelligence
Weakly-Supervised Network for Detection of COVID-19 in Chest CT Scans
title Weakly-Supervised Network for Detection of COVID-19 in Chest CT Scans
title_full Weakly-Supervised Network for Detection of COVID-19 in Chest CT Scans
title_fullStr Weakly-Supervised Network for Detection of COVID-19 in Chest CT Scans
title_full_unstemmed Weakly-Supervised Network for Detection of COVID-19 in Chest CT Scans
title_short Weakly-Supervised Network for Detection of COVID-19 in Chest CT Scans
title_sort weakly-supervised network for detection of covid-19 in chest ct scans
topic Computational and Artificial Intelligence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8545309/
https://www.ncbi.nlm.nih.gov/pubmed/34812352
http://dx.doi.org/10.1109/ACCESS.2020.3018498
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