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Multilevel depth-wise context attention network with atrous mechanism for segmentation of COVID19 affected regions

Severe acute respiratory syndrome coronavirus (SARS-CoV-2) also named COVID-19, aggressively spread all over the world in just a few months. Since then, it has multiple variants that are far more contagious than its parent. Rapid and accurate diagnosis of COVID-19 and its variants are crucial for it...

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Autores principales: Qayyum, Abdul, Mazhar, Mona, Razzak, Imran, Bouadjenek, Mohamed Reda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer London 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8546198/
https://www.ncbi.nlm.nih.gov/pubmed/34720443
http://dx.doi.org/10.1007/s00521-021-06636-w
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author Qayyum, Abdul
Mazhar, Mona
Razzak, Imran
Bouadjenek, Mohamed Reda
author_facet Qayyum, Abdul
Mazhar, Mona
Razzak, Imran
Bouadjenek, Mohamed Reda
author_sort Qayyum, Abdul
collection PubMed
description Severe acute respiratory syndrome coronavirus (SARS-CoV-2) also named COVID-19, aggressively spread all over the world in just a few months. Since then, it has multiple variants that are far more contagious than its parent. Rapid and accurate diagnosis of COVID-19 and its variants are crucial for its treatment, analysis of lungs damage and quarantine management. Deep learning-based solution for efficient and accurate diagnosis to COVID-19 and its variants using Chest X-rays, and computed tomography images could help to counter its outbreak. This work presents a novel depth-wise residual network with an atrous mechanism for accurate segmentation and lesion location of COVID-19 affected areas using volumetric CT images. The proposed framework consists of 3D depth-wise and 3D residual squeeze and excitation block in cascaded and parallel to capture uniformly multi-scale context (low-level detailed, mid-level comprehensive and high-level rich semantic features). The squeeze and excitation block adaptively recalibrates channel-wise feature responses by explicitly modeling inter-dependencies between various channels. We further have introduced an atrous mechanism with a different atrous rate as the bottom layer. Extensive experiments on benchmark CT datasets showed considerable gain (5%) for accurate segmentation and lesion location of COVID-19 affected areas.
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spelling pubmed-85461982021-10-26 Multilevel depth-wise context attention network with atrous mechanism for segmentation of COVID19 affected regions Qayyum, Abdul Mazhar, Mona Razzak, Imran Bouadjenek, Mohamed Reda Neural Comput Appl S.I. : AI-based e-diagnosis Severe acute respiratory syndrome coronavirus (SARS-CoV-2) also named COVID-19, aggressively spread all over the world in just a few months. Since then, it has multiple variants that are far more contagious than its parent. Rapid and accurate diagnosis of COVID-19 and its variants are crucial for its treatment, analysis of lungs damage and quarantine management. Deep learning-based solution for efficient and accurate diagnosis to COVID-19 and its variants using Chest X-rays, and computed tomography images could help to counter its outbreak. This work presents a novel depth-wise residual network with an atrous mechanism for accurate segmentation and lesion location of COVID-19 affected areas using volumetric CT images. The proposed framework consists of 3D depth-wise and 3D residual squeeze and excitation block in cascaded and parallel to capture uniformly multi-scale context (low-level detailed, mid-level comprehensive and high-level rich semantic features). The squeeze and excitation block adaptively recalibrates channel-wise feature responses by explicitly modeling inter-dependencies between various channels. We further have introduced an atrous mechanism with a different atrous rate as the bottom layer. Extensive experiments on benchmark CT datasets showed considerable gain (5%) for accurate segmentation and lesion location of COVID-19 affected areas. Springer London 2021-10-26 /pmc/articles/PMC8546198/ /pubmed/34720443 http://dx.doi.org/10.1007/s00521-021-06636-w Text en © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle S.I. : AI-based e-diagnosis
Qayyum, Abdul
Mazhar, Mona
Razzak, Imran
Bouadjenek, Mohamed Reda
Multilevel depth-wise context attention network with atrous mechanism for segmentation of COVID19 affected regions
title Multilevel depth-wise context attention network with atrous mechanism for segmentation of COVID19 affected regions
title_full Multilevel depth-wise context attention network with atrous mechanism for segmentation of COVID19 affected regions
title_fullStr Multilevel depth-wise context attention network with atrous mechanism for segmentation of COVID19 affected regions
title_full_unstemmed Multilevel depth-wise context attention network with atrous mechanism for segmentation of COVID19 affected regions
title_short Multilevel depth-wise context attention network with atrous mechanism for segmentation of COVID19 affected regions
title_sort multilevel depth-wise context attention network with atrous mechanism for segmentation of covid19 affected regions
topic S.I. : AI-based e-diagnosis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8546198/
https://www.ncbi.nlm.nih.gov/pubmed/34720443
http://dx.doi.org/10.1007/s00521-021-06636-w
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