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Prognostic implications of ferroptosis-associated gene signature in colon adenocarcinoma
BACKGROUND: Colon adenocarcinoma (COAD) is one of the most common and fatal malignant tumors, which increases the difficulty of prognostic predictions. Thus, new biomarkers for the diagnosis and prognosis of COAD should be explored. Ferroptosis is a recently identified programmed cell death process...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Baishideng Publishing Group Inc
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8546824/ https://www.ncbi.nlm.nih.gov/pubmed/34734046 http://dx.doi.org/10.12998/wjcc.v9.i29.8671 |
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author | Miao, Yan-Dong Kou, Zhi-Yong Wang, Jiang-Tao Mi, Deng-Hai |
author_facet | Miao, Yan-Dong Kou, Zhi-Yong Wang, Jiang-Tao Mi, Deng-Hai |
author_sort | Miao, Yan-Dong |
collection | PubMed |
description | BACKGROUND: Colon adenocarcinoma (COAD) is one of the most common and fatal malignant tumors, which increases the difficulty of prognostic predictions. Thus, new biomarkers for the diagnosis and prognosis of COAD should be explored. Ferroptosis is a recently identified programmed cell death process that has the characteristics of iron-dependent lipid peroxide accumulation. However, the predictive value of ferroptosis-related genes (FRGs) for COAD still needs to be further clarified. AIM: To identify some critical FRGs and construct a COAD patient prognostic signature for clinical utilization. METHODS: The Cancer Genome Atlas database (TCGA) and Gene Expression Omnibus databases were the data sources for mRNA expression and corresponding COAD patient clinical information. Differentially expressed FRGs were recognized using R and Perl software. We constructed a multi-FRG signature of the TCGA-COAD cohort by performing a univariate Cox regression and least absolute shrinkage and selection operator Cox regression analysis. COAD patients from the Gene Expression Omnibus cohort were utilized for verification. RESULTS: Our research showed that most of the FRGs (85%) were differentially expressed between the corresponding adjacent normal tissues and cancer tissues in the TCGA-COAD cohort. Seven FRGs were related to overall survival (OS) in the univariate Cox analysis (all P < 0.05). A model with five FRGs (AKR1C1, AKR1C3, ALOX12, CRYAB, and FDFT1) was constructed to divide patients into high- and low-risk groups. The OS of patients in the high-risk group was significantly lower than that of the low-risk group (all P < 0.01 in the TCGA and Gene Expression Omnibus cohorts). The risk score was an independent prognosticator of OS in the multivariate Cox analysis (hazard ratio > 1, P < 0.01). The predictive capacity of the model was verified by a receiver operating characteristic curve analysis. In addition, a nomogram based on the expression of five hub FRGs and risk score can precisely predict the OS of individual COAD cancer patients. Immune correlation analysis and functional enrichment analysis results revealed that immunology-related pathways were abundant, and the immune states of the high-risk group and the low-risk group were different. CONCLUSION: In conclusion, a novel five FRG model can be utilized for predicting prognosis in COAD. Targeting ferroptosis may be a treatment option for COAD. |
format | Online Article Text |
id | pubmed-8546824 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Baishideng Publishing Group Inc |
record_format | MEDLINE/PubMed |
spelling | pubmed-85468242021-11-02 Prognostic implications of ferroptosis-associated gene signature in colon adenocarcinoma Miao, Yan-Dong Kou, Zhi-Yong Wang, Jiang-Tao Mi, Deng-Hai World J Clin Cases Clinical and Translational Research BACKGROUND: Colon adenocarcinoma (COAD) is one of the most common and fatal malignant tumors, which increases the difficulty of prognostic predictions. Thus, new biomarkers for the diagnosis and prognosis of COAD should be explored. Ferroptosis is a recently identified programmed cell death process that has the characteristics of iron-dependent lipid peroxide accumulation. However, the predictive value of ferroptosis-related genes (FRGs) for COAD still needs to be further clarified. AIM: To identify some critical FRGs and construct a COAD patient prognostic signature for clinical utilization. METHODS: The Cancer Genome Atlas database (TCGA) and Gene Expression Omnibus databases were the data sources for mRNA expression and corresponding COAD patient clinical information. Differentially expressed FRGs were recognized using R and Perl software. We constructed a multi-FRG signature of the TCGA-COAD cohort by performing a univariate Cox regression and least absolute shrinkage and selection operator Cox regression analysis. COAD patients from the Gene Expression Omnibus cohort were utilized for verification. RESULTS: Our research showed that most of the FRGs (85%) were differentially expressed between the corresponding adjacent normal tissues and cancer tissues in the TCGA-COAD cohort. Seven FRGs were related to overall survival (OS) in the univariate Cox analysis (all P < 0.05). A model with five FRGs (AKR1C1, AKR1C3, ALOX12, CRYAB, and FDFT1) was constructed to divide patients into high- and low-risk groups. The OS of patients in the high-risk group was significantly lower than that of the low-risk group (all P < 0.01 in the TCGA and Gene Expression Omnibus cohorts). The risk score was an independent prognosticator of OS in the multivariate Cox analysis (hazard ratio > 1, P < 0.01). The predictive capacity of the model was verified by a receiver operating characteristic curve analysis. In addition, a nomogram based on the expression of five hub FRGs and risk score can precisely predict the OS of individual COAD cancer patients. Immune correlation analysis and functional enrichment analysis results revealed that immunology-related pathways were abundant, and the immune states of the high-risk group and the low-risk group were different. CONCLUSION: In conclusion, a novel five FRG model can be utilized for predicting prognosis in COAD. Targeting ferroptosis may be a treatment option for COAD. Baishideng Publishing Group Inc 2021-10-16 2021-10-16 /pmc/articles/PMC8546824/ /pubmed/34734046 http://dx.doi.org/10.12998/wjcc.v9.i29.8671 Text en ©The Author(s) 2021. Published by Baishideng Publishing Group Inc. All rights reserved. https://creativecommons.org/licenses/by-nc/4.0/This article is an open-access article that was selected by an in-house editor and fully peer-reviewed by external reviewers. It is distributed in accordance with the Creative Commons Attribution NonCommercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited and the use is non-commercial. See: http://creativecommons.org/Licenses/by-nc/4.0/ |
spellingShingle | Clinical and Translational Research Miao, Yan-Dong Kou, Zhi-Yong Wang, Jiang-Tao Mi, Deng-Hai Prognostic implications of ferroptosis-associated gene signature in colon adenocarcinoma |
title | Prognostic implications of ferroptosis-associated gene signature in colon adenocarcinoma |
title_full | Prognostic implications of ferroptosis-associated gene signature in colon adenocarcinoma |
title_fullStr | Prognostic implications of ferroptosis-associated gene signature in colon adenocarcinoma |
title_full_unstemmed | Prognostic implications of ferroptosis-associated gene signature in colon adenocarcinoma |
title_short | Prognostic implications of ferroptosis-associated gene signature in colon adenocarcinoma |
title_sort | prognostic implications of ferroptosis-associated gene signature in colon adenocarcinoma |
topic | Clinical and Translational Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8546824/ https://www.ncbi.nlm.nih.gov/pubmed/34734046 http://dx.doi.org/10.12998/wjcc.v9.i29.8671 |
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